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I would like to use MultiPipMaker for testing a genome alignment between two sequences, each sequence is in .fasta format, but the problem is that when I submit the couples of file that I need, the web browser sends an email that the blastz has timed out. Does anybody know why is the that?

The address of the program is:


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How big are the sequences that you are submitting? – Alan Boyd Nov 1 '13 at 22:09
they are 4 Mb each one approximately – Layla Nov 1 '13 at 22:19

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