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I know a similar question has been asked and this is closely related to cognitive science. However, I want to know whether is there any mechanism or structure in the visual cortex which is proved to be flipping the images upside down.

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I recommend you go over to cogsci.se and have a look at this thread. Its basically the same question and the answers are pretty nice including some references. –  Chris Jan 14 at 7:30
    
@Chris.. i wonder why cognitive sciences is a separate SE. It is a part of biology. –  WYSIWYG Jan 16 at 5:02
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