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I'm looking for a software to calculate Fst from 3 loci DNA data of individuals from a metapopulation. I don't have any prior on the population structure (have no idea of the number of subpopulations for example)

I've been looking at FSTAT but it doesn't run on MAC.

Do you have any easy alternative?

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it should be pretty easily implementable in perl or python. – WYSIWYG Jun 26 '14 at 6:39

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