I have a vector sequence and would like to find the following nucleotide sequence in it.
This query sequence uses several degenerate symbols, defined as:
- S = C or G (Strong)
- Y = C or T (pYrimidine)
- W = A or T (Weak)
- R = A or G (puRine)
(See this page for a complete description of the IUPAC nucleotide codes.)
Is there a tool to align this sequence with the vector and find all the possible sites?
EDIT: I found this website but couldn't find any of the resources helpful. Maybe one of these will work but I found most of them too complicated. If you know which one will work and explain how to use it I will be grateful.