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Is there any software that could be used to rapidly (quicker than humans) count the eggs laid by Drosophila on a substrate by placing them under a microscope with a camera attached? The eggs are laid on the surface of the food and have a fairly uniform shape - we regularly have to count the number of eggs in >200 vials, which can take a over 4-5 hours per 100 vials.

I wonder if there is some software which could be linked to a microscope with mounted camera connected to a computer, the software could then count from the live feed or a quickly taken photograph. It wouldn't have to be perfect but as long as it could be as accurate as humans (which is surprisingly low from our experience - we count up to a set amount then remove the rest, e.g. if I was aiming to leave 180 eggs I would be quite happy to get anywhere between 150-200 eggs). It would be using a stereo-microscope (aka dissection microscope) with a mounted camera.

The surface of the food with eggs looks something like this -> enter image description here purely for illustration, taken with iPhone - real images on microscope would be able to get closer (food surface could fill screen) and have more uniform lighting to give better contrast (this was taken to show in a talk so I wanted pretty rather than practical). The bottom two quarters of the food in this picture would be similar to the real result, just much closer...

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Matlab allows image analysis like this. Check the matlab image analysis toolbox. –  WYSIWYG Apr 16 '13 at 8:55
    
@WYSIWYG I'll give it a look, do you know if it would be able to do this live? (i.e. put the vial under the scope, focus it, click a button & get a count, then I remove some eggs & put it back under for a recount?) –  GriffinEvo Apr 16 '13 at 9:05
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I am sure it can be configured for a direct data acquisition and counting. I remember someone telling me about counting fluorescent puncta in cells, under confocal microscope, using matlab. That is, however, beyond the scope of my existent skills and you can talk to any instrumentation engineer in your university –  WYSIWYG Apr 16 '13 at 9:09
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another software called LabView by national instruments can also do such a job. It's not that difficult to use. –  WYSIWYG Apr 16 '13 at 9:10
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here's another image analysis package that may do what you want fiji.sc/Fiji –  Michael Kuhn Apr 16 '13 at 10:02

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