The study of chemistry within the scope of biology: the compounds that occur and the reactions involving them in living organisms.

learn more… | top users | synonyms

0
votes
0answers
6 views

To Study Interactions of two molecules in PubChem

Assume you have two substances Diosminum / Hesperidinum. The former strengthens vascular walls. The latter has role in some glycoside biosynthesis. From Biochemistry, I recall that glycodises have ...
-2
votes
0answers
21 views

Meta-analysis for the Biochemistry of Water filtering systems? [on hold]

I am trying to find meta-analysis and US government's official websites about water filtering and recommendations. The selection of the system is dependent on the quality of the water. So you can ...
1
vote
1answer
18 views

Why is deficiency of thiamin characterized by brain malfunction [on hold]

Why is deficiency of thiamin characterized by brain malfunction.
4
votes
2answers
73 views

Can an organism process H₂O into H₂O₂?

In an answer to a recent question on Worldbuilding, I suggested that an organism convert $H_2O$ into $H_2O_2$. I suggested a few processes that yielded the desired final result ($2H_2O \rightarrow ...
0
votes
0answers
12 views

Bacterial/microbial metabolism of sucrose in fruit juices

While taking out the recycling this morning, I noticed that my old orange juice carton seemed to be inflated. Opening the cap relieved a lot of pressure built up inside the carton. I'm thinking that ...
1
vote
0answers
55 views

Solid phase use in HIV rapid tests

I have a question in regards to my HIV test research. The rapid tests like Orasures Oraquick contains a strip of synthetic peptides that are used to represent proteins found in the envelope region of ...
3
votes
1answer
52 views

Statistics on energy consumption breakdown per biological functions across organisms?

Are there any statistics available on how much energy organisms use for each biological functions (i.e. something similar to the line of "Bacteria spend X% of energy on information processing, Y% for ...
0
votes
0answers
13 views

Substrate specificities of GPPS, FPPS and GGPPS (isoprenoid biosynthesis enzymes)

I have some questions related to isoprenoid synthesis enzymes. Does Geranylgeranyl pyrophosphate synthase (GGPPS) contribute in Geranyl-Pyrophosphate (GPP), Farnesyl pyrophosphate (FPP) and ...
2
votes
1answer
66 views

How does temperature influence the rate of protein degradation?

For computer modeling purposes, I am looking for some referenced quantitative measurements of the effect(s) of temperature on biochemical reactions. Question In particular, my question is: How does ...
3
votes
1answer
74 views

Identify the pink mold infecting refrigerated lemons [closed]

I made lemon juice 6 month ago. I just washed the lemon using brush and then cut them into pieces. Then I put one layer of lemon in the bottle followed by one layer of sugar Again one layer of lemon ...
1
vote
2answers
45 views

Are fatty acids and glycerol lipids?

As far as I know, lipids are defined as biomolecules which are hydrophobic. Triglycerides are composed of fatty acids and glycerol and are considered lipids but, are fatty acids alone or glycerol ...
3
votes
2answers
72 views

What are the physiological roles of Hydrogen sulfide?

I am thinking why hydrogen sulfide has its effects in the body. For instance, it is one Salmonella's virulence factor. I am not sure if such a balance equations holds H2O + H2S ←→ ... Actually, I ...
3
votes
1answer
49 views

Basic question about multiplex PCR

Let's say I have a DNA sequence with the following structure: $$ 5' - N_n - S_1 - N_{1000} - S_2 - N_{1000} - S_3 - N_n - 3' $$ Here, the $N$s represent stretches of arbitrary sequence of the ...
2
votes
2answers
136 views

Why would an Eadie-Hofstee Plot be non-linear?

Besides cooperativity between multiple active sites on an enzyme, what are the other reasons for the Eadie-Hofstee plot to be non-linear?
1
vote
2answers
67 views

Book Recommendations: GRE Subject Test In Biochemistry, Cell And Molecular Biology

There are probably a lot of really good answers that may vary significantly in terms of content. I'm looking for a set of books that I can read in preparation for the GRE Subject Test In ...
5
votes
1answer
75 views

enzymes that stabilize DNA loops

As a follow-up of a previous question, I would like to know what enzymes or protein complexes have been used to manipulate DNA samples into stabilizing DNA loops. I have read that cohesin is one of ...
23
votes
1answer
1k views

Ripening bananas artificially: What is the biological reason

I am a resident of the tropical island of Sri Lanka, and we have a strange traditional method to ripen our bananas quickly. What we do is this: We dig a pit in earth that is enough to put the whole ...
1
vote
2answers
57 views

Is there a difference between polarity and hydrophobicity?

From literature the two terms seem to be interchangeable when discussing protein domains and motifs. But biochemically, what are the specific differences between these two terms? For example what is ...
0
votes
1answer
19 views

Can Omega 3 Fatty Acids prevent chest pain in periodic Atrial Fibrillation?

It is debated if omega-3 polyunsaturated fatty acids (N3PUFa) may be effective in preventing AF (atrial fibrillation), meta-analysis here. However, much less has been considered this: Do N3-PUFAs ...
5
votes
3answers
150 views

How does protein denaturation work?

I was wondering how protein denaturation works. Are there covalent bonds, such as disulfide bridges involved, or is it based purely on non-covalent bonds such as hydrogen bonds? Why is denaturation ...
4
votes
1answer
30 views

Examples of genes involved in plastic responses

Adaptive plasticity involves sensing the environment and responding adaptively to it. Intuitively, I would think that this process may ask for a more or less complex genetic machinery of regulation of ...
2
votes
1answer
40 views

PSI-BLAST website algorithm parameters

http://blast.ncbi.nlm.nih.gov/Blast.cgi In this website, when I want to apply the psi-blast algorithm on a sequence, under the section of algorithm parameters , what does PSI-BLAST threshold mean? ...
3
votes
2answers
46 views

Tracking of oxygen molecules in glucose oxidation

For this reaction, found in typical biochemistry textbook: $C_6H_{12}O_6 + 6O_2 \to 6CO_2 + 6H_2O$ I am interested in where do the oxygen atoms of $6O_2$ go. I think they go to $6H_2O$, but this is ...
0
votes
1answer
457 views

Amino acid characteristics that determine their chemical properties?

What chemical aspect of amino acids results in their having different properties such that the chemical and physical properties of polypeptides vary with both amino acid content and amino acid order? ...
5
votes
1answer
72 views

Fermentation to acetic acid

How much time is needed for the fermentation to acetic acid production cycle, and the conversion of apple vinegar in a sealed container incubated at 37 °C? Should be in the fully closed? What is ...
4
votes
1answer
20 views

Phospholipid movement in cell membranes

What causes phospholipids to flow so quickly in cell membranes? In Biology by Cambell et al. they state that a phospholipids can travel up to 2 micrometers per second. Is that a random movement or has ...
5
votes
1answer
85 views

In which way would the yeast cell cope with the excess amount of methionine in the growth media?

I guess that when there is surplus of methionine in the cell it is incorporated in the TCA cycle as a succinyl CoA, with cysteine as a by-product. But now the cell has the surplus of cysteine. What ...
2
votes
1answer
707 views

What is the reaction mechanism of dopamine hydroxylase converting dopamine to norepinephrine?

The reaction is basically shown below. Dopamine hydroxylase is an enzyme, so I'm not sure if we can have a theory based on organic chemistry. On the other hand, maybe there is a theory that involves ...
12
votes
3answers
33k views

What is a coupled reaction and why do cells couple reactions?

I was wondering what exactly a coupled reaction is and why cells couple them. I read the wikipedia article as well as several others, such as life.illinois.edu but I still don't get it. Could ...
11
votes
3answers
2k views

Where does the 'C' in exhaled CO₂ mostly come from?

When a human being exhales CO₂, what is, by the numbers, the main source of carbon atoms exiting the body in this way? I mean what class of cells, or which tissues are the biggest on a pie chart of ...
0
votes
1answer
115 views

Pathway mediates nitroglycerin-induced relief from angina pectoris [closed]

what kind of Pathway mediates nitroglycerin-induced relief from angina pectoris,please provide some idea...
44
votes
4answers
6k views

Why 22 amino acids instead of 64?

This question got me thinking about amino acids and the ambiguity in the genetic code. With 4 nucleotides in RNA and 3 per codon, there are 64 codons. However, these 64 codons only code for 22 ...
2
votes
1answer
50 views

What Biology topics are linked to the Nitrogen Cycle? [closed]

What other educational topics are linked to the Nitrogen Cycle? I am a Science teacher, and I need to organise my lessons. Thanks!
0
votes
1answer
37 views

Epitope annotated protein

What is epitope annotted protein?? The book from which I got this term is : http://www.springer.com/biomed/immunology/book/978-1-4939-1114-1
1
vote
1answer
50 views

How do the quantities of ATP formed during aerobic and anaerobic respiration compare? [closed]

How do the quantities of ATP formed during aerobic and anaerobic respiration compare?
1
vote
1answer
25 views

What are the reactions in the body that triggers dizziness after cigar(nicotine) smoking in non-smokers?

Suppose there is a person that has never used nicotine in any form in his/her life. Why does the person get dizzy after a few "shots" from a cigar(nicotine)? What's the difference between using other ...
1
vote
1answer
11 views

What enables azacitidine to incorporate into both DNA and RNA?

I did a mini-project on the drug azacitidine for my pharmacology class, and I learned that azacitidine has the ability to incorporate into both DNA and RNA. I think this is really unique because a ...
6
votes
2answers
244 views

HIV and effectiveness of inhibitor cocktail over single inhibitor

I'm looking for clarification on the answer to this question. It's in my biochemistry class but I figured this is more Biology than Chemistry, so I'm asking it here. The question is: One of the ...
2
votes
1answer
48 views

Is the activity of enzymes in the human body affected by the outer temperature?

I have to do a research about the enzymes in the human body and the things that affect them. I know that the body temperature affects the activity of enzyemes but I'd like to know if the outer ...
1
vote
2answers
60 views

Are triglycerides fat?

I have a quick question: Are triglycerides essentially what we call "fats"? I've tried reading up on it but there seems to be some conflicting information. Thank you.
1
vote
1answer
17 views

Help me understand my membrane potential assignment

Epithelial with the ability to transport NaCl is bathed in an isotonic salt solution with these values (in mM): 136 Na, 6 K, 140 Cl. The intracellular concentrations are: 45 Na, 100 K, 13 Cl. The ...
1
vote
2answers
53 views

How does high-fidelity of DNA replication depend on the formation of hydrogen bonds?

Replication has an error rate of less than 1 in 100 million. DNA polymerase forms H-bond with the H-bond acceptor atoms in the minor groove. <-- enhance fidelity here? Binding of the triphosphate ...
8
votes
1answer
230 views

How do the pharmacodynamics of the NSAIDs differ and are there “resistant” COX phenotypes?

I know that the non-steroidal anti-inflammatory drugs (e.g., aspirin, ibuprofen, naproxen) affect the enzymes cyclooxygenase (types I and II). Is there any difference in the degree to which these ...
2
votes
2answers
64 views

peptide MHC microarray

"The recent technology is peptide–MHC microarray or artificial antigen-presenting chip. In this technique, recombinant peptide–MHC complexes and co-stimulatory molecules are immobilized on a ...
4
votes
2answers
447 views

Are there any multicellular forms of life which exist without consuming other forms of life in some manner?

The title is the question. If additional specificity is needed I will add clarification here. Are there any multicellular forms of life which exist without requiring the consumption (destruction) of ...
0
votes
1answer
37 views

Book-recommendation: Biochemistry

I need to have a book which covers following topics two may also be fine: (a) Structure and role of carbohydrates, fats, fatty acids and cholesterol, proteins and amino-acids, nucleic acids. ...
1
vote
1answer
32 views

Understanding intra and extracelullar concentrations (membrane potential)

I have 4 question (not homework) What happens to the cells membrane potential if: a) Na+ outside rises by 40mM b) K+ inside rises by 10mM c) K+ outside rises by 10mM d) A- (impermeable ion) ...
3
votes
1answer
50 views

NADH inhibits gluconeogenesis?

I was told in a physiology lecture that alcohol inhibits gluconeogenesis because 'NADH produced from ethanol catabolism leads to product inhibition'. But is NADH not a reactant coenzyme of ...
0
votes
0answers
21 views

Is there a known glucosepane cross-link breaker?

I read the following on wikipedia: There is, however, no agent known that can break down the most common AGE, glucosepane, which appears 10 to 1,000 times more common in human tissue than any ...
4
votes
1answer
52 views

Why is the ebola virus so intense now?

So i'm looking into the ebola crisis and it seems the death toll is really getting crazy. I understand that it's a cytomegalovirus and that it basically overwhelms the immune system due to it's size ...