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0answers
19 views

Need to solve a “pseudo-metabolic” network for rates

following problem: I have data on a certain complex association network (from monomers 1 ... 8 to complexes of all combinations, such as, 12 ... 13 ... 18 and so on until 12345678, so that I know ...
1
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0answers
15 views

Biological neural network nad output layer [closed]

I have a question. I have read the code C model biological neural network Eugene M. Izhikevich (https://senselab.med.yale.edu/modeldb/showModel.cshtml?model=115968 - spnet.cpp - C program to simulate ...
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1answer
23 views

How are PPI networks constructed?

I am a CS graduate working in Computational Biology. While the theoretical aspects of both AP/MS (and the various types) and Y2h are quite clear to me, the actual technical aspect of building ...
5
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1answer
89 views

What are some examples of undirected weighted networks in ecology?

I'm a math major with a current interest towards network theory. A network can be considered as a collection of nodes, and edges between these nodes signifying some relation between them. The most ...
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0answers
38 views

Shortest path and influenza spread

I have been researching on the applications of the shortest path problem to biology. I thought about modelling the spread of influenza virus and wondering if there was previous research on the topic. ...
0
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1answer
75 views

Applications of shortest path problem

The shortest path problem is the problem of finding the shortest path between multiple nodes. What are the applications of the shortest path problem in biology? A simple google search gives me this ...
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1answer
59 views

What pattern can be learned from the data of RNA seq counts and HiC matrix? [closed]

I now have some data on the RNA seq counts and related Hi-C matrix of gene segment on a chromosome. My concern is, basically, what can we do with these data so as to establish the connection between ...
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0answers
108 views

What software/approach to use to build a graph based on microarray gene expression correlation?

What software to use to build a graph based on microarray gene expression mutual correlation? I have tried Cytoscape`s Reactome FI and a recipe from R bioinformatics cookbook, however, need a more ...
0
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1answer
31 views

Biosphere that simulates sun and moon shifts

Is there an enclosed biosphere that artificially simulates the movement of the sun and moon at increased intervals? It is known that the sun and moon alter plant movements therefore I was wondering ...
5
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5answers
229 views

What are some examples of evolving networks in biology?

I'm a master student working on networks analysis in general. A network is something that has nodes and there are links between the nodes. Nodes and links could have attributes. An evolving network is ...
7
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2answers
102 views

Neuronal Architecture of the Brain

To what extent do brains (e.g. of humans) contain recurrent connections? I am studying artificial neuronal networks and frequently encountered the statement, that recurrent neural networks are ...