Tagged Questions
4
votes
1answer
38 views
How to get smallest subtree containing a set of nodes from BioPhylo?
I'm testing out various phylogenetic libraries in Python. I want to read in a Newick tree, then, given a list of taxa, generate the smallest tree that contains them all. This task is quite simple and ...
9
votes
3answers
3k views
What is the difference between orthologs, paralogs and homologs?
These three terms are often misused in the literature. Many researchers seem to use them as synonymous. So, what is the definition of each of these terms and how do they differ from one another?