Genetics is the branch of biology that deals with the transmission and variation of inherited characteristics.

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Publicly available genotype data?

I am a statistician and I'd like to test my new method on biological data. For this I am looking for genotype data for a number of individuals. That is, I am looking for something like this: ...
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Maintaining purebred pedigrees and how to lessen chance of getting disease?

Many breeds of dogs are known for a high incidence of genetic disorders. German shepherd and Saint Bernard dogs are predisposed to developing a crippling condition called hip dysplasia. Q: What ...
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Punnett square help?

Please help! I have no idea how to do this problem. A plant breeder crossed two plants, one with red flowers, and the other with white flowers. Red is dominant. Calculate the phenotype and genotype ...
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Affect of the health of the male parent at the time of conceiving

Does it matter at all in determining the traits of a baby what the current health of the father is? For example, let's say I got diabetes at the age of 40 because of the poor lifestyle choices. Will ...
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26 views

How do I determine the parental type here?

Please consider the following question: You cross Drosophilia and receive the following offspring: 965 wild-type, 944 black- vestigial, 206 gray- vestigial, and 185 black- normal. Explain your ...
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57 views

How HIV Affects and Its Treatment using Combination Therapy

Can someone please help me with the following questions. I've written my specific questions right after the text question. Human immunodeficiency virus (HIV) is a retrovirus. Its genome is a single ...
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paralogue genes in genome-wide association studies?

Has anybody tested if paralogous genes are over-represented among the genes identified by genome-wide association studies (GWAS)? For example, if a GWAS study finds 200 genes associated to the ...
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130 views

Correlation between genome size and mutation rate?

Martin Nowak in his book "Evolutionary Dynamics" talks about a given correlation between genome size and mutation rate. What correlation does exactly exist between these two concepts? Is it a ...
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How well supported is the hypothesis that aging is mainly caused by the number of mutations in tissues?

I heard the hypothesis, that the (main) reason of aging is the increasing number of mutations in body tissues. The higher the number of mutations is, the older tissue is. Is this true? And how well ...
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127 views

On average how many genes / alleles do people share?

I am curious about how much more a child can be alike to one parent than the other. If a child were to inherit all the alleles that are shared between both parents from one parent, but inherit all ...
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34 views

Are recessive, deleterious alleles less common on the X chromosome than the autosomes in humans?

Because there's potential for them to be more readily purged in hemizygous males (and in cell lineages in females with the deleterious-allele-bearing chromosome activated), I would expect the ...
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107 views

How many loci explain 50%, 80%, 99%, … of the total genetic variance in fitness?

Standard models in population genetics look up at the evolution of few loci which impact fitness. The variance in fitness is determined by the genetic variance and the environmental variance (and the ...
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102 views

Genetic expression in interspecific hybrids

Referring to interspecific hybrids, I have the following two questions:- Quoting from wikipedia:- The offspring of an interspecific cross are very often sterile; thus, hybrid sterility ...
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62 views

effect of background selection on promoter regions compared to distant enhancers?

Has anyone looked at the effect of background selection on the levels of conservation of promoter regions compared to distant enhancers? Do promoter regions have a higher conservation due to ...
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0answers
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Did the eugenics program in Nazi Germany have a measurable effect?

Did the killing or sterilisation of people considered as living a "life unworthy of life" in Nazi Germany have any measurable effect on the "average health" of Germany? Is there any statistical ...
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0answers
40 views

Data analysis of transcriptome sequencing data

I want to learn more about the data analysis and statistics on transcriptome sequencing data. I would like to read some important papers of the field and books and maybe some MOOCS, if they are ...
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51 views

Could miniaturization be used to protect endangered large species?

In some animals (like dogs) size seems like it's controlled mostly by just a few genes (IGF1, and the genes that repress it). I'm curious: (1) Does other miniaturization takes a similar route (for ...
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What are polytene bands, and why are they there?

Drosophila polytene chromosomes have been particularly useful in genetic research, as it made cytogenetic gene mapping possible with very little effort. This was primarily accomplished due to polytene ...
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59 views

What is the frequency of double-hets between parent and child?

Say both parent and child are genotyped for all SNPs. In this setup we are only looking at variant positions between one parent and child - so neither parent nor child are homozygous reference (no ...
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Is there a gene that starts meiosis 2?

Yesterday I thought about a question and asked it to my friend. The question was which gene is completely the same for a male cell that made meiosis 1 recently. My answer was the gene that starts ...
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List of heritability estimates in humans?

Many people on this site ask questions that directly or indirectly have to do with heritability in human. Do you know a list of estimates of heritability of various traits in humans? Or could you try ...
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Cosmid genomic library, or genomic cosmid library?

Which usage is better for referring to a "cosmid library of genomic DNA fragments"?
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15 views

Is it reasonable to assume that RNA polymerase would bind preferentially to the promoter of the long allele of the SERT gene?

I'm trying to come up with an idea for a school project (a hypothetical research study). I'm looking at depression and the serotonin transporter gene, which is highly expressed in the human ...
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21 views

Gibson assembly using NeBuilder

I am supposed to construct a plasmid that contains features from two other plasmids. My strategy is to generate three fragments form the two other plasmids. I was encouraged to try Gibson assembly, ...
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57 views

Eye color genetics

I am trying to find a model to link the phenotype eye color to its genotypes. I know that there exists a simple model from Davenport, which explains {brown,blue} eyes. Further, there is an extended ...
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Terminology question: the scope of an allele in an organism

Let us consider a gene FOO with novel type foo. If I were discussing an organism that has inherited foo in every cell during classical zygote formation, then I would ordinarily just say that the ...
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Which disorders are fully concordant?

I work in neuroscience, mostly Alzheimer's disease (AD), with some work in autism spectrum disorder (ASD). The work is in gene regulation and epigenomics. I'm familiar with monozygotic twin (MZ) ...
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Codominance and Partial dominance

The following genetic tree is given regard the fur color of some animal. The color determined by one gene that have two alleles and 3 genotypes: black, white and inlaid. I've been asked to ...
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24 views

What is TILLING?

How does TILLING (Targeting Induced Local Lesions in Genomes) work? What is needed to perform a TILLING experiment, and what kind of information can we get out of it?
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Referencing the homologous chromosomes

There exist a co-ordinate system from chromosomes like "12p11.3". In this system, first integer range from 1 to 23 i.e it takes homologous chromosomes as a pair. If we want to distinguish among ...
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38 views

Definition of species - location of gene

I know that species have been classified on basis of reproduction , DNA similarity , niche, etc. Has there been a classification based on locus of genes ? What are the drawbacks/shortcomings of ...
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32 views

What do genotoxic scoring (Sa) values mean?

The genotoxic scoring is an estimator of genotoxic potency whose values range from 100 to -100. What is the interpretation of those different positive and negative values? (for instance ethanol Sa= ...
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What is neutral genetic differentiation?

What is neutral genetic differentiation? Presumably it's a measure of the distance between organisms in terms of their genetics, but what does 'neutral' refer to?
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31 views

Randomized experimental design in genetic experimentation.

I am struggling to find out if randomization is used in traditional genetic breeding experimentation with model organisms, especially in lab contexts? And why this should be so? This is part of a ...
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63 views

Can mammals from different species reproduce?

I'm curious on how genetically different can two animals be in order to reproduce. Could they belong to different species? One example is the mule which is the offspring of a donkey and a horse, in ...
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Recombination-based vs. Sequence-based genetic mapping

Now that sequencing is becoming increasingly cheap, what is the value of recombination-based genetic mapping against the sequence-based genetic mapping? I think that in the past recombination-based ...
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133 views

Extreme examples of protein translation/use coupling/decoupling?

What are known extreme examples of protein translation/effect coupling/decoupling? For example, examples of proteins that are immediately used at the time the have been translated and vice versa, ...
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Paracentric Inversion and Mutations Question Help Needed

Would someone please be able to help with questons 3 or 4. (one of the at least please) please don't report his as off-topic. first, this is NOT a homeowork question. It's a practice question I am ...
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32 views

Gene linkage/mapping

I need some help with this question in the image posted. As you can see in the instructions, I'm asked to map the genes. So the first thing I did is write out the alleles corresponding to each ...
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28 views

Best way to automatically link Gene Entrez ID with Gene Symbol in TCGA

I am trying to figure out how to link Gene Entrez ID with Gene Symbol, for TCGA dataset. So far, I have found this ftp directory with Gene info updated daily. But, for Entrez ID 728661, I have found ...
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53 views

Genetic Linkage/Mapping question Help

Hello everybody! I need some help with this question in the image posted. As you can see in the instructions, I'm asked to map the genes. So the first thing I did is write out the alleles ...
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gamete frequency of recombination

A female genotype, shown as abc / +++ produces 100 meiotic tetrads. Among these, 68 showed no cross over (NCO) events; 20 showed single crossover (SCO1) between a and b; 10 showed single ...
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How do you amplify a specific AFLP marker?

I'm trying to clone a specific AFLP marker out of Medicago truncatula. I know the selective bases I need for the end of the primers. My problem is that all the AFLP cloning kits I have found are ...
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Question about DU variant and HIV

I'm A- DU variant and was told that the DU variant is what makes RH negatives resistant to toxoplasmosis and that not all RH negatives have the DU variant so not all are resistant to toxoplasmosis. I ...
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128 views

What is the genetic IQ?

I have asked Helmuth Nyborg how it is possible that average western IQ is going down and keeps growing at the same time, as he claimed in ...
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51 views

best known indexing method / transformation to coordinates for gene sequences

What would be the best known method to transform a gene or proteine sequence to some coordinate space (so $t(G)$ is the transformed sequence) complying to following rules: similar sequences ...