Questions pertaining to genome-wide association studies.

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How to do a whole genome analysis of Multidrug-resistant Mycobacterium tuberculosis

I'm looking for tutorials and software that can help me study whole genome sequence data is and genome wide associations. I have Matlab and Bioconductor R so anything involving those packages would be ...
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What free software is the best for the alignment and phylogenetic tree construction from the two or more .fasta whole genome sequence files?

What free software is the best for the alignment and phylogenetic tree construction from two or more .fasta whole genome sequence files? I have tried to run alignment using CLC Genomics workbench ...
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Phenotype choice for one of a MZ twin pair in a genetic association study

I was having a discussion with a colleague and this question came up... It is commonplace in molecular genetics studies to only genotype one of a pair of monozygotic twins (and then implicitly impute ...