Kinetics is the study of rates of chemical or biochemical reactions, as well as the metabolic flux rates of biochemical intermediates within the body (e.g. glucose, amino acids, lipids, bile acids).

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Monod Kinetics--Growth of E.Coli in a Bioreactor

I am doing a study for a lab class. We are growing E. Coli in a bioreactor. We want to vary the volume of the initial biophase which we add after the substrate has been brought to 37 degrees C. My ...
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Concentration of a specific promoter in a cell?

I want to simulate transcription activation by a given transcription factor (TF) with known kinetics. The binding rate $k_{on}$ is given in $\mu M^{-1} s^{-1} $, describing a bimolecular reaction ...
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Change in synthesis rate of a molecule changes equilibrium concentration

I was reading the topic of 'The concentration of the molecule can be adjusted quickly only if the lifetime of a molecule is short' from Molecular Biology of the Cell by Alberts. At the end of pg-837 (...
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Convert flux value in nmol/min/mg protein to nmol/min/cell?

This is a question about unit conversion. I found an experimental measurement of the saturation uptake of glucose in yeast: $$V_\textrm{max} \approx 650 \textrm{nmol}/\textrm{min}/\textrm{mg protein}$...
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Is there a way to quantify in vivo cholesterol transport rates?

I have always had trouble grasping the physiology of lipoprotein cholesterol transport. The "standard" description found in the literature is that liver synthesizes cholesterol which is carried in "...
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Conservation equation of a reaction scheme

Consider the reaction scheme. where $S$ is the substrate, $E$ is the enzyme, $P$ is the product, $C_1$ and $C_2$ are enzyme substrate complexes. Let $[S] = s$, $[E] = e$, $[C_1] = c_1$, $[C_2] = ...
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Fastest G protein coupled reactions

As per few references, fastest G protein coupled reaction known is Drosophila melanogaster phototransduction which produces quantum bumps with average latency of 45 ms (and peak response around 200 ms)...
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567 views

Does pH affect Michaelis constant?

I have been trying to confirm the Km of a substrate (which is 34 +/- 4 mM). This value was obtained in 50 mM MOPS, pH 6.3. I conducted my kinetics assay in a buffer of pH 7 and obtained a Km value in ...
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Incremental denaturation of protein mixtures

When a protein solution is heated above the denaturation temperature, it seems that denaturation does not happen at the time the temperature is reached, but it takes some time. I assumed that ...
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Prenatal hyperkinetic dysfunction and its effect on endurace

Do people with an hyperkinetic dysfuntion have a better endurance? Are they fitter in cause of their Dopamine-overdose or any other reason? I have a case, where someone does not do any sports, but ...
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Enzyme kinetics [closed]

I can't understand how to study enzyme kinetics. Say I have a lipase and want to study the kinetics of this lipase using a fluorogenic substrate, how would I do this? From what I understand I would ...
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phosphorous availability to mycorrhizae and parent plant, timing - paper search

I'm researching (for my work) phosphorous uptake in monocots to develop planting mixes for riparian planting. I recently saw a paper suggesting (the author lacked proof) that root zone mycorrhizae ...
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Why are enzyme-catalysed reactions slower at lower substrate concentration?

Suppose I'm using 200 nmoles of enzyme and 2 mmoles of substrate. The enzyme should be saturated but if I use 50 mmoles of substrate, the reaction will be faster. Why? I just can't get it! Even at ...
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Michaelis-Menten Kinetics: Does measuring apparent Km and Vmax take into account competing reactions?

I am learning about why it is important to measure Km and Vmax for each experimental setup because measuring the "apparent" Km and Vmax includes enzyme inhibitions of which one might not be aware. ...
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783 views

$S_{0.5}$ vs $K_m$ values in enzyme kinetics

What is the difference between $S_{0.5}$ values and $K_m$ values in enzyme kinetics?
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At what substrate concentration will an enzyme work at 40% of its maximum rate if its Km = 0.095M?

The question involves the Michaelis-Menten kinetics equation. Here is what I did: I took the Michaelis-Menten equation, replaced v with 0.4Vmax, canceled the Vmaxes (one on each side), and solved ...