The set of biochemical reactions that sustain life by directly or indirectly affecting energy expenditure and/or storage, as well as the complete regulation of those reactions and the enzymes that catalyze them; including, hormonal, cell-signaling, and substrate level regulation.

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86 views

Statistical method for characterizing the relationship between body mass and metabolic rate

There is a dataset that contains body mass ($x$) and metabolic rate ($y$) from many different organisms. It is common to fit the data to the model of the form $y=ax^b$ and estimate the parameters $a$ ...
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1answer
81 views

How do muscle cells synthesize glycogen?

Hexokinase enzyme is present in all cells (including muscle cells) and can be suppressed by excessive G-6-P product. So that's why in the liver, glucokinase can act on glucose without inhibition of it ...
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51 views

How does heat generated by metabolism differ compared with heat generated through exercise?

I am from a mathematical background so I don't have much knowledge on biology. I'm building a mathematical model to predict heat generation with parameters of metabolic heat generation and exercise ...
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1answer
95 views

Why do mice have a higher metabolism?

Mice and other small animals have higher metabolic rate than humans. How does that happen on cellular level, if we look on one cell in the mouse body? What is it in this cell that will be ...
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1answer
28 views

Does exercising increase the rate at which UV rays are absorbed and cause affects?

Does exercising while in sunlight affect the rate at which the human body absorbs and reacts to UV rays? As sunburn is the secretion of fluids, increased dilation of blood vessels and inflammation of ...
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36 views

Is high metabolism linked to high evolutionary turnover?

I recently read The Dinosaur Heresies by Robert T. Bakker, a 1986 popular science book presenting arguments for an active lifestyle and high metabolic rate in dinosaurs. One of the arguments that ...
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113 views

Why are Mammals are unable to produce Essential Fatty Acids?

Why do we have to get them from our diet, and if they aren't taken in our diet we will face disease? Then why we don't have the enzymes which are require for EFA synthesis?
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48 views

Is there a metabolic pathway that generates methanol?

I've been looking for help topics about methanol in metabolism. Specifically, I wish to know what is a common dietary component that generates methanol following metabolism and comment on its ...
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35 views

Are there any enzymes synthesised by humans that specifically catalyse the hydrolysis of non-cyclic Imides?

Imides or dicarbonyl amides are an interesting class of compounds that includes the pharmaceuticals thalidomide, aniracetam and a few other drugs. These compounds, however, are cyclic and I'm ...
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74 views

Iron metabolism in the brain

I did an expression profiling from publicly available RNAseq data for mouse tissues. While for liver and testes I am getting expected proteins in the top highly expressed mRNAs, for brain I am getting ...
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89 views

Food Intake versus ability to flee among birds, particularly the hummingbird?

Logically speaking, if a hummingbird drinks too much nectar, it will be temporarily overweight and less able or unable to fly to escape danger. However if the same hummingbird doesn't drink enough ...
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14 views

Metabolic control theory: proof of the summation theorem?

I'm looking for a rigorous proof of the summation theorem of metabolic control theory. The only sources I find are the original papers by Kacser and Burns 1973 and Heinrich and Rapoport 1974, both of ...
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21 views

Which biosynthetic pathways take place in the plastid and were are they located?

I know that the isoprenoid, jasmonate, glucosinolate, fatty acids, chlorophyll, starch, and aromatic amino acid syntheses are located in the plastid. But I don't know if they are located in the ...
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77 views

Does the metabolic rate determine how fast the telomeres shorten?

In many papers one can read that telomeres may play an important role in longevity. According to Calado et al.1 the telomeres of mice are much longer than the telomeres of humans. However, mice have ...
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48 views

Is body energy production and consumption cyclical?

If we look into how energy is produced by the humans, it always involves some kind of periodicity: fuel combustion rotates engines, water rotates turbines, nuclear chain reactions heat up water, which ...
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83 views

Why is a nicotinamide-tryptophan combination used to treat affective episodes in a few older clinical trials?

At least one of the journal articles that reported on such clinical trials allured to the nicotinamide-tryptophan pathway that I assume must be related to the metabolism of tryptophan into serotonin ...
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122 views

Are simple esters like those used as flavouring agents metabolised into their constituent carboxylic acids and alcohols in the human body?

By this I mean to ask whether say ethyl butanoate is hydrolysed in humans into ethanol and butyric (butanoic) acid. This is of interest to me as a pharmacology researcher because butyric acid, for ...
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15 views

How are muscle fibre size and oxygen consumption related?

Does anyone know of a paper which correlates the muscle fibre size to oxygen consumption in mammals? I am trying to find a correlation between muscle fibre type, size and (absolute and specific) ...
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30 views

What is the actual function of HDLs and CETP?

I know that HDLs collect cholesterol from peripheral tissues and transport it back to the liver using SRB1 - Reverse cholesterol transport and dumping it in bile. So the tissue is producing some extra ...
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31 views

How much energy would it cost to synthesize all cholesterol requirements de novo?

Imagine a scenario in which some person is unable to absorb any dietary cholesterol because of some intestinal mutation (for example). Thus, they have no cholesterol available from their diet for ...
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24 views

Which metazoans host anaerobes to aid in digestion? Do any host oxic digestive tracts?

Many metazoans (e.g., mammals, insects, earthworms) have anoxic digestive tracts that are colonized by anaerobic microbes that perform portions of digestion of food for the host. Some other metazoans ...
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0answers
20 views

How is the enzyme glycogen synthase regulated?

How is the enzyme glycogen synthase regulated in regards to glycogen synthesis? I think I understand that phosphorylation decreases its activity (through glycogen synthase kinase?), but what role do ...
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0answers
35 views

Which Lactobacillales (Lactic acid bacteria — LAB) strains are capable of degrading starch?

I've been researching bacteria strains but am having trouble finding amylolytic LAB strains with amylolytic and lactic acid producing character. The only species I've found, that are capable of ...
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38 views

Why are carbohydrates the most common short-to-medium-term energy storage form in biology?

According to this table, gasoline has a specific energy noticeably higher than fat and more than twice that of carbohydrates; even short-chain hydrocarbons like ethanol and even methanol offer an ...
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156 views

Where do the H+ ions come from in light reactions?

In the light-dependent reactions of photosynthesis, H+ ions pass to the thylakoid space. Where do these protons come from?
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455 views

Why do plants produce so much more sugar than they use?

I recently asked the question, "Do plants need O2 to consume energy they've stored via sugar?" to which @canadianer responded, "Yes, plants require oxygen to generate ATP from sugar. However, they ...
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12 views

How reactive are reduced antioxidant molecules?

When antioxidant molecules stabilize free radicals, they themselves become unstable and reactive but to a lesser degree. How reactive are these reduced antioxidant molecules? And what substance ...
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24 views

Can you change your gut microbiota by changing your diet? Would that affect calorie uptake?

I have seen peer-reviewed papers mentioning the daily changes in gut microbiota composition according to dietary changes. See for example this paper: http://genomebiology.com/2014/15/7/R89 My ...
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83 views

Regulation of Cra protein level in E coli

Catabolite Activator/Repressor, Cra protein (formerly known as Fructure Repressor FruR) plays a significant role in central carbon metabolism of E coli. Its activity is inhibited by ...
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186 views

How do cells slowly degrade 5,5'-dibromo-4,4'-dichloro-indigo?

5,5'-dibromo-4,4'-dichloro-indigo is the product of X-gal cleavage, often used as a reporter with B-galactosidase. I've made the (unreferenced) observation that it seems as though the blue product ...
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20 views

Why lactate inhibits growth (or enhances death rate)?

Extracellular lactate tends to inhibit cellular growth or enhance cell death. This happens in the vicinity of tumors and in cell cultures. See for example this reference: Ozturk, Sadettin S., Mark ...
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16 views

Glycoprotein hormones metabolism

Why do the carbohydrate groups in glycoprotein hormones decrease the rate of metabolism? And increase the half-life?
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0answers
20 views

Diffusion coefficients of glucose in mammal tissues?

Where can I find estimates/experimental measurements of the diffusion coefficient of glucose in mammal tissues? Specefically I mean the inter-cellular space. I'm not looking for a specific tissue, so ...
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26 views

Can an inhibited enzyme be activated by an activator molecule binding to a second allosteric site?

Can the inhibition caused by a inhibitor molecule(ATP that attaches itself to an allosteric site of a subunit of the PFK-1) be reversed by the binding of an activator molecule (AMP that binds to an ...
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13 views

Is there a way to quantify in vivo cholesterol transport rates?

I have always had trouble grasping the physiology of lipoprotein cholesterol transport. The "standard" description found in the literature is that liver synthesizes cholesterol which is carried in ...
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0answers
27 views

Why is alcohol purged from the body more slowly when we sleep?

It is a popular belief that when you get asleep after drinking alcohol, in the morning you have higher level in your blood than if you stayed awake the whole night. Is this true? If so, why? Is it ...
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16 views

Can a computer display work as a daylight lamp?

During winter time I often see advertisements for daylight lamps which are supposed to compensate for the lack of daylight in a winter season. The specs of such a daylight lap seems to be an LED ...
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19 views

metabolic heat generation and exercise intensity

Is there a relationship between bio heat equation (found here) and exercise intensity as described here That is I am trying to include the effect from exercises to the tempertaure variation in skin. I ...
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0answers
27 views

Is there any evidence to suggest that exercise reduces the side effects of caffeine?

I heard a friend say: I'm not drinking coffee this week. My body can only process the caffeine if I run at least 15km a week. I found this claim fascinating - that exercise temporarily ...
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0answers
11 views

What's the relationship between Drugbank drugs and SMPDB pathways?

In the 'pathway browse' panel SMPDB pathways and their corresponding Drugbank drugs are listed. What are the relationships between the drugs and the pathways? Some listed drugs are not in the ...
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32 views

Cell energy consumption and food intake

I am wondering if each cell in human body starts consuming ten percent more energy, how much food one has to consume compared to normal intake?
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90 views

Does ale give less of a hangover than a lager?

I got into an argument surrounding beer type and hangover. Apparently there is a opinion that ales give you less hangover than lagers do (considering same alcohol content consumed). My understanding ...
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0answers
51 views

Why doesn't the body optimize how many fatty acids it burns?

Ketone bodies are produced due to an excess of fatty acids being burned (accumulation of acetyl-CoA) so my question is: Why doesn't the body simply regulate how many fats it burns so it doesn't have ...