Microbiology is the study of organisms that are too small to be seen with the naked eye. This includes organisms like bacteria, fungi, protozoa, and others.

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Beetroot white skin mould

Does a mould make a beetroot poisonous or inedible ? Lemon's mould for instance, makes penicillin, but it's green there, and I'm allergic to penicillin, would the white mould produce penicillin too? ...
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150 views

Is every part of a virus important for replication?

Is every component of a virus absolutely essential for its infection and replication in a host cell? Or can you just have parts of it to cause infection?
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136 views

Non-monotonic knock-out effects in prokaryotes

Typically, when performing gene-knockout, the experimenters select one gene to remove/replace-with-junk and then see if the prokaryote can still undergo fission. If it continues to reproduce then the ...
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66 views

Need for proper air filter for bioreactor?

I am going to build a simple bioreactor for microalgae growth. I already have fluid filters pore size: 0.2um, diameter: 25mm https://nl.vwr.com/app/catalog/Product?article_number=514-4039 I wonder ...
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142 views

Vigorous shaking for HFR interrupted mating

I am trying to reproduce E. coli interrupted mating using an HFR strain, and I read that the cultures should be vigorously shaken at times to interrupt the DNA transfer from the F+(HFR) donors to the ...
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82 views

Why do 6-8% of diphtheria patients do not develop natural immunity after being affected?

I am thinking of why some patients do not have natural immunity after exposure to the A-B toxin of diphthria. I think the A-B exotoxin is the key factor causing this disease and should trigger memory ...
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1k views

Why do kefir grains stop growing in soy milk?

Kefir is a fermented milk drink made with kefir grains. It usually is prepared by inoculating cow, goat or sheep milk with kefir grains. I would like to prepare the drink with soy milk, which worked ...
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50 views

What is “bacto” peptone?

Standard recipes for yeast medium often include "bacto-peptone". Is this the same as bacteriological peptone? Is there an authoritative source that spells it out?
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68 views

When might an inhibitor of bacterial transformation be useful?

I am part of a project elucidating some structures that are required for bacterial transformation. We have the opportunity to screen inhibitors of the system to stop it from functioning. I am not a ...
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217 views

How do I measure bacterial growth in agar dishes (either by cell mass or by cell count)?

I am doing an experiment in which I am growing S. mutans in agar dishes, and I am not sure how I would measure the growth of the S. mutans. I am also not sure if I would do this by measuring cell mass ...
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206 views

Factor causing Methicilin-resistance in MRSA?

I think the main reason is the natural selection that is causing methicillin-resistance. However, I am not completely sure what this means practically. Here, the original question: MRSA was isolated ...
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462 views

Is it possible for a person to become “reinfected” with the same strain of a virus?

If a person contracts a virus, viral conjunctivitis for example, is it possible for the individual to become "reinfected" with the exact same strain of the virus once the person has it treated and the ...
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130 views

What molecular processes are involved in pseudopodial extension?

I am curious as to the processes and mechanisms involved in the extension of pseudopodia in amoeba. How does the cell know and control the direction and extent of pseudopodia formation at a molecular ...
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487 views

“Acellular” designation for organisms

Why do some biologists refer to single-celled organisms such as Amoeba and Paramecium as acellular (i.e., without cells) rather than unicellular (i.e., one cell)?
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135 views

By what mechanism is Streptococcus bovis acting as a risk factor for colorectal cancer?

Streptococcus bovis bacteremia/endocarditis is considered a risk factor for colorectal cancer. What pathophysiological mechanism may link the two together?
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297 views

How was the diversity between ethanol fermentation and lactic acid fermentation evolved?

Quite simply, some organisms metabolize glucose under anaerobic conditions via Glucose->(2) Pyruvic Acid->(2)Ethyl Alcohol. Some organisms, however, metabolize to lactic acid. When did such a process ...
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99 views

Highly spherical Radiolaria; does this image accurately depict the organism?

If I understand correctly, Cenosphaera spp. is a type of Radiolaria, which is a type of zooplankton. The following is an image of Cenosphaera spp. is from the supplementary material (Figure S2) of ...
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263 views

Can Naegleria fowleri enter through the eyes ( example rinsing/splashing eyes with water)

I understand that it primarily enters the body through the nose by by "feeding on the olfactory neurons in the nose" as answered here in a different question. Would the nerve cells in the eyes present ...
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218 views

Short-term Lamarckism in asexual single cell organisms

I was reading through the Karr et al. (2012) whole-cell computational model. One of the things they did was to induce single-gene disruptions in their model. They observed several to be fatal, but: ...
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122 views

For people who work in microbiology labs, what software do you use to manage your strains?

It's just a small microbiology lab that currently records everything on paper, and there's quite few mutants as well. Is Excel commonly used for this sort of thing? Or is there a better software to ...
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119 views

Can someone explain the color-changing unit (CCU) to me?

I've been physically carrying out serial tenfold dilutions on samples of Ureaplasma to work out the color-changing units (CCU). As a definition, the CCU is the highest dilution at which there is a ...
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94 views

Can Listeria monocytogenes endotoxin act as an A-B toxin?

I think no, but I am not sure since Listeria is Gram-positive and probably has lipopolysaccharide (exception among Gram positive bacteria). Can Listeria monocytogenes' endotoxin act like exotoxin ...
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169 views

What type of photosynthesis is performed by phytoplankton?

I am not a biologist, but I know there exist three variants of photosynthesis, namely C3, C4 and CAM. I would like to know what type is used by the ocean's phytoplankton? It might also be that ...
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177 views

Where would Saccharomyces cerevisiae be found in highest concentrations in environment?

I have bakers asthma specifically to 'Sc' yeast, and know to avoid bakeries, breweries, etc... I have figured out to not disturb rotting leaf piles, and fermenting bark mulch. Where else? What ...
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135 views

How to learn biomathematics?

I'm currently an undergraduate math student and researching on the internet I discover that exists an area called "biomathematics". Looks so interesting. They use the graph theory and topology to ...
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49 views

Anaerobic respiration choice in E. coli

Under anaerobic conditions E. coli has two options to generate ATP: fermentation (substrate-level phosphorylation), and respiration (proton gradient, chemisomotic phosphorylation). Which is favored? ...
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71 views

Why does the mixture of infant formula with saliva provide an ideal breeding ground for disease-causing micro-organisms?

From: http://www.nal.usda.gov/wicworks/Topics/FG/Chapter4_InfantFormulaFeeding.pdf Discard any infant formula remaining after a feeding. The mixture of infant formula with saliva provides an ideal ...
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61 views

Do bacteria with capsular antigen always have a capsule?

Assume some bacteria have capsular antigen. Do these bacteria always have a capsule? I think not, I think the antigen only makes it possible.
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56 views

observed luminescence in a piece of plaice

A plaice fish bought for human feed has been cleaned and cooked. Some parts of the raw body have been left out of the fridge at about 22°C for about 15 hours. During the following night a ...
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39 views

How can a respiratory infection lead to a skin infection?

Example of a case: 5 children develop a bright red rash on the face and turns violet after a few days and then disappears. Then maculopapular rash appears on the trunk, buttocks and extremities. It ...
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47 views

Salvaging a plasmid from a cell culture stored at the incorrect temperature

I have E. coli with transformed plasmid on agar in a vial. It has been stored at -20 degree C without glycerol stock for 18 hours. This is a continuation of: Survival of E. coli on agar plate at -20 ...
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30 views

How does the MMR vaccine affect lymph nodes in preventing measles?

I am trying to understand this statement about the Measles part of the MMR (Mumps, Measles and Rubella) vaccine Measles prevention: MMR (AB protect during primary and secondary viremia) Measles ...
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81 views

What kind of a microscope do I need to see cell organelles?

I would like to study cells and looking for a microscope that would allow me to see: groups of cells individual cell cells organelles I would like to target insects and mammal tissue. I would be ...
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31 views

Which strains of C. diphteria are causing Diphteria toxin?

I got this question: Diphteria toxin is produced only by those strains of C. diphtheria that have which of the following characteristics? Encapsulated glucose fermenters lysogenic for b-prophage ...
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87 views

E. coli, risk of infection?

There has been a warning about E. coli contaminated water in South Florida. Now I'm wondering are there empirical data or historic cases which show a correlation between E.coli levels in tap water and ...
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72 views

Aerobe or facultative anaerobe organism that metabolizes acetate?

I'm assuming bacteria, but will take any suggestions. Organism must survive primarily on the acetate (plus trace elements), but I can give/take electrons, if necessary. Not interested in strict ...
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147 views

Image Processing Suite for bacterial microscopy: Schnitzcells or MicrobeTracker?

I am looking to start doing some work tracking the size and growth of individual bacterial cells in the microscope. In order to analyze the images I need software that can segment the cells, ...
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39 views

Shortest route for a Nitrogen atom from fossil fuel to a protein in your body?

Millions of years ago fossil fuels originated from plants. A nitrogen atom from fossil fuel is now inside in a protein molecule in your body. What is the shortest path that the nitrogen atom ...
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42 views

Why do fresh cavities form from the margins of sliver amalgam fillings on teeth?

Silver amalgam fillings predominantly contain silver a known bactericidal agent and mercury which a known toxin and has bactericidal property. So how is it that the plaque bacteria survive near the ...
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Elevated transaminases after blood transfusion?

This sparks HCV immediately in my mind. However, there may be other possibilities too. What can you deduce from elevated transaminases if you only know that the healthy adult patient received blood ...
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41 views

Endophytic Xylariaceae: diversity and taxonomy inferred from rDNA sequence analyses

"Thailand is considered as one of the areas containing a high percentage of unknown taxa of Xylariaceae (Rogers 2000). In Thailand, several studies on endophytic fungi have been documented, namely, ...
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24 views

How is the appropriately-stratified gut microbiome acquired in organisms performing horizontal transmission?

I am studying horizontal transmission of primary symbionts in insect reproduction. This reminded me of an earlier question I had asked, in which I learned that humans analogously acquired their ...
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158 views

How to obtain bacteria samples?

Would anyone know how to go about obtaining samples of Salmonella or E. coli for purely educational purposes? Note: I just want to look at the stuff under a microscope.
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142 views

List of all reported bacteria

I would like to know were to download a table file with all reported bacteria and its corresponding PHYLUM, CLASS, ORDER and FAMILY. Basically, its the same table than this one from GOLD genomes but ...
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806 views

What are the differences between G+ and G- bacteria?

The distinction between Gram-positive and Gram-negative bacteria is based upon the Gram staining method, that reflects the bacterial wall physical properties. However, this classification involves ...
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14 views

Do Yersinia genus spp have anything movement factors?

It can spread in blood (Type III secretion system -> apoptosis). I am interested if there is any others ways to move. Do Yersinia spp have anything virulence factors to move?
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29 views

Staphylococcus AG structure?

I found this statement in my study materials in the section of Staphylococcus The AG structure: protein AG (species specific); polysaccharide AG (serotype specific). I know what is ...
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376 views

Can Naegleria fowleri enter through your ear?

Is it possible to get infected with the amoeba, Naegleria fowleri, through your ears, or is the nose the only way it can enter to cause infection? How commonly is it found in your stool as well?
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109 views

Lineage selection in plasmid evolution

I've been reading through Paulsson (2002) and I am not sure what he means by "lineage selection" in the second to last section. The paper deals with plasmid replication, and mostly concentrates on the ...
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190 views

Would two species of yeast with similar genome sizes have the same number of genes or chromosomes?

Similar organisms generally have similar genome sizes. Given this, would two species of yeast have the same number of genes and chromosomes? Edit: Fixed with thanks to @daniel-standage