The study of the molecular processes of the nucleus and cell function.

learn more… | top users | synonyms

1
vote
0answers
16 views

How is “fine mapping of pelvic regulatory region” done in the stickleback PitX1 paper?

I'm working through this paper for a class. I'm a bit confused by the methods they used in one experiment. So the researchers are studying spine development in stickleback fish. They noticed some ...
2
votes
1answer
51 views

Do the antibodies in a patient suffering from Hashimoto's, attack the thyroid hormones or the thyroid gland (or both?)?

If oral thyroid hormone supplement is administered, is the attack stopped or does it just create an excess of thyroid hormones so that even after a lot of it is destroyed by the antibodies, there is ...
2
votes
1answer
32 views

How does Organ Transplant work well despite having Foreign DNA

My question is little bit related to this one Why does organ transplant work although it seems organ's motor neuron isn't connected to recipient's CNS but only little bit. Problem ...
2
votes
2answers
62 views

Difference between DNA and Genome

Can we safely use the terms DNA and Genome interchangeably or is there any (even slight) difference between the two?
1
vote
1answer
41 views

How does cytochrome c oxidase inhibition cause cell death?

I realise the inhibition of cytochrome c oxidase prevents the release of H+ ions into the intermembrane space, and that the ion gradient is required for ATP synthase action. However, I'm not sure how ...
1
vote
1answer
35 views

BWA-MEM single strand or doublestrand alignment

In whole genome secondary analysis does BWA-MEM use a double stranded fasta reference or are reads aligned to only one, single stranded fasta reference?
1
vote
1answer
45 views

What is 'noise'?

In both my psychology, biology and neuroscience classes, professors are constantly talking about 'noise'. For instance, our perception is limited due to 'sensory noise' in our neurons. I am utterly ...
1
vote
1answer
62 views

How difficult is it to make a shRNA/miRNA/siRNA to silence/knockdown NaV1.7 voltage gated sodium channels in humans?

There have been various research projects that experimented with shRNA/miRNA/siRNA to specifically silence/knockdown NaV1.7 voltage gated sodium channels in small animals like rats & guinea pigs. (...
1
vote
0answers
66 views

Which of the three is true for insulin receptors?

I have seen the following question in a Cell Biology exam: Which of the following is true" Insulin has an hydrophobic Signal Peptide and the insulin receptor does not have an hydrophobic ...
4
votes
1answer
52 views

Is HSV-vector-mediated miRNA expression in dorsal root ganglia stable?

My question is on the following article: "Reduction of voltage gated sodium channel protein in DRG by vector mediated miRNA reduces pain in rats with painful diabetic neuropathy" My question is, do ...
1
vote
1answer
165 views

how to change format of ent file into PDB format?

whenever i download files from Protein Data Bank(PDB),they are downloaded in .ent format. How can i convert them into PDB format??
4
votes
2answers
70 views

Do only one or both pairs of homologous chromatids exchange genetic material during the process of crossing over?

To be specific: Assume chromosomes A and B are homologous. They've both replicated into A1, A2 and B1, B2 and have formed a tetrad at the equator (synapsis). Most textbooks show either A1 and B1 OR A2 ...
1
vote
0answers
17 views

Ions in different cell compartments

I would like to understand the distribution of metal ion concentrations (such as Mg2+) in the different cell compartments. I tried very hard but still couldn't find such information. Could anyone help?...
1
vote
1answer
120 views

How the chaotropic agents help in purification of DNA molecule?

Those plants which are rich in secondary metabolites and polysaccharides DNA isolation can be done using certain chaotropic agents? can any one explain how it works?
1
vote
1answer
61 views

Chromosomomal walking

I'm having a great deal of trouble understanding chromosomal walking, especially in regards to this article: Control of male sexual behavior and sexual orientation in Drosophila by the fruitless ...
2
votes
1answer
52 views

How do proteins perform their function [closed]

I have asked a question on physics stackexchange, but was redirected here. I copy the entire question word for word. The original is here. Let's, for example, take a ribosome. It is an enzyme that ...
1
vote
0answers
11 views

final control prior to transfecting an expression vector into a mammalian cell?

I have been asked a general question: Once I have cloned a full-length cDNA into an expression vector, what final important control must I do before I transfect this into an embryonic stem cell line? ...
1
vote
0answers
75 views

Which DNA fragments do not have expected sizes on this gel electrophoresis?

The problem is such: After performing a PCR, the vector carrying the PCR fragment with two restriction enzymes (Nhe1 and Asc1). The DNA samples were then separated using agrose gel electrophoresis ...
3
votes
1answer
109 views

Why is photosynthesis so complex?

Actually, what is the need of such long procedure? As much as I have understood, the sole purpose of photosynthesis is to synthesize carbohydrates, which is only used for energy storage. So, why don't ...
1
vote
0answers
53 views

How does lactic acidosis lead to pain?

I come from Physics, not biology. My understanding is that without sufficient oxygen present, the Kreb's cycle terminates in lactic acid formation for the body to later continue the reaction when ...
4
votes
1answer
40 views

Can you knockout specific receptors in an adult?

Sorry I don't have a good understanding of this topic, but I'm guessing that "receptor knockout" is related to/a part of "gene knockout"? And If I understand correctly, gene knockout is currently ...
2
votes
3answers
218 views

Why don't housekeeping genes have TATA Box regions in their promoter sequences?

Housekeeping genes are genes that are continuously transcribed. Like all other genes they have promoter sequences, but they don't have TATA box sequences that are used to specify from where ...
1
vote
0answers
43 views

What are the effects of non-ultraviolet light radiation on DNA?

I am trying better understand the effects of varying the frequency of light on DNA, however, most of what comes up is "UV light" and how it is damaging to DNA (presumably by ionization). Have there ...
3
votes
0answers
62 views

What is the advantage of using plant-derived antibacterials rather than bacteria-derived antibacterials?

So obviously we have a big problem with antibiotic resistance. Most of our antibiotics originate from bacteria themselves (or are synthetic variations on scaffolds which originate from bacteria). I ...
1
vote
0answers
25 views

Degenerate primer designing software

Can any one provide online free degenerate primer designing software. I have tried couple of them like CODEHOP is one where BLOCK formatting step finding difficulty, can anyone help me out....
3
votes
0answers
22 views

What are flagged primers? [closed]

I'm interested in amplifying a sequence for further use with Gibson Assembly. I want to create overhang regions in my DNA fragment so there would be complementarity to the plasmid I'm trying to insert ...
1
vote
0answers
19 views

Yew seed dormancy reduction

Yew seeds have very long dormancy when artificially planted. They are also adapted to passage through digestive systems of animals that eat/transport them. But could the dormancy be shorter (or the ...
3
votes
3answers
80 views

miRNA targets mRNAs

If we observe that a miRNA, say hsa-mir-233, targets a mRNA, say XXX, in a given tissue in disease condition, can we say that always hsa-mir-233 targets mRNA XXX regardless of type of tissue and ...
1
vote
0answers
91 views

Why do PCR manufacturers recommend assembling the reaction mix on ice?

Many PCR manufacturers recommend preparing the reaction mix for the reaction on ice. For example, here is NEB's recommendation for their Q5 polymerase. Other manufacturers also include similar steps: ...
1
vote
1answer
38 views

gene transformation from plant to plant - transgenic plant

I want to know if the expression of a transfered gene depends on source of the gene, if e.g.: 1] I isolate a gene from plant and transfered it to the same plant? 2] I isolate a gene that is highly ...
2
votes
1answer
25 views

Degree of complementarity

Apologies in advance for asking bit naive question. I have looked up for this concept a lot but didn't find anything. The wikipedia (I know its not authentic all the time, but I think works well for ...
1
vote
1answer
99 views

Enzymes and plasmids

A high school class has analyzed plasmids by the help of restriction enzymes and electrophoresis. The class got delivered two different plasmids, pBR 322 and pC 508. These two plasmids were going to ...
-2
votes
1answer
77 views

Homework Question: Confused about figure related to cDNA and gDNA

what is the answer in blank? I think the loop structure for the top blank is an intron. I think RNA is the answer for the bottom blank, but it is cDNA, so it can't be RNA. I cannot figure out what ...
2
votes
1answer
131 views

What does it mean to clone a gene?

When I look up information related to the identification of disease genes, texts will often refer to the gene being "first cloned." What does "clone" mean in this context? Is it simply a synonym for ...
2
votes
0answers
52 views

PCR that worked previously is now only showing primer dimers and a smear on gel

PCR amplification of a promoter sequence for gel extraction worked beautifully using Phusion HF enzyme with GC (higher error but less picky) buffer. However, DNA concentration from the gel extraction ...
1
vote
0answers
18 views

Amputation of part of the cytoplasm of the amoeba? [closed]

We ampute a part of the cytoplasm of the amoeba many times and we observe that amoeba is not divided This experience allows to deduce the cause of the division of amoeba Do that have relation with ...
2
votes
1answer
40 views

genetic complementation problem

I've attached the picture of the problem. SO, based on the information I managed to assemble two large cistrons. (if the combination of two mutants yield (-) mutations are on the same chromosome) A)...
1
vote
0answers
38 views

Can genes be expressed sequentially?

As I understand it, any gene on an exposed/unpacked region of a chromosome is continuously being expressed. Regulatory genes may increase or decrease the amount of protein synthesised due to its ...
1
vote
0answers
34 views

Biological modeling languages - some basic issues

I am trying to get used to with couple of modeling languages in biological context like SBML, BioPAX, Kappa and BEL. Some basic issues came up to my mind that are unclear to me even after a lot of ...
2
votes
0answers
34 views

Gel Electrophoresis

we add Etbr within the agarose gel but we do not add Etbr directly in native PAGE ?when we make agarose gel, we add Etbr before its solidification but we do not add Etbr when the native PAGE gel is in ...
1
vote
3answers
44 views

importance of cDNA sequencing of a specific gene in different plants

i want to know what if i made a sequence of cDNA of a specific gene in different plants - what is the important from the sequence and can if found difference between plants , and can i use this ...
2
votes
2answers
118 views

Why does agrose gel runs horizontally, and SDS-PAGE gel runs vertically?

It seems in electrophoresis, agrose gel always runs horizontally, and SDS-PAGE gel always runs vertically, why?
2
votes
2answers
34 views

Function and expression of pseudogenes

Can pseudogenes be transcribed into mRNA and translated into functional proteins, or should they be regarded as functionless mutated genes?
2
votes
2answers
73 views

How important is non-binding site of protein?

Just a curious question: What will happen if i remove most protein sequence that encoded for non-binding site of Restriction Enzyme to make a new enzyme, can the new restriction enzyme still work?
2
votes
1answer
2k views

What is the role of glycine in the running buffer for SDS-polyacrylamide gel electrophoresis

We used pH6.8 in stacking and pH8.8 in resolving gel. In the class, the professor explained that the glycine change is like: ...
3
votes
2answers
132 views

Question about proto-oncogenes and oncogenes?

My textbook says: Growth-promoting genes are called proto-oncogenes. Some can be changed into oncogenes by a point mutation that alters the ability of the proto-oncogene to be switched off. They ...
5
votes
1answer
178 views

How is adrenaline (also known as “epinephrine”) a ligand?

I keep reading that adrenaline is a ligand, however, from what I understand a ligand is a molecule or ion which donates a pair of electrons to a central transition metal ion in a complex. If this is ...
1
vote
1answer
77 views

Is there any way to make protein pass through cell membrane?

Protein cannot pass cell membrane because it's a large molecule. Until now, is there any technique that can make protein pass through the cell membrane in vivo? I want to create a protein-drug that ...
1
vote
2answers
102 views

Getting PCR amplification at annealing higher than Tm!

I am amplifying a gene where in a gradient pcr i am getting amplification at an annealing temperature about 5 degrees (67) higher than Tm (62.5)? What is wrong here? Also, I am getting a very strong ...
0
votes
2answers
46 views

General transcription factors vs. DNA Binding transcription factors

I know that DNA binding transcription factors are trans-acting, but what about general transcription factors? Are they cis or trans acting?