Computer programs that aid in the storage, processing, and analysis of biological data.

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Do blurry images cause eye strain? At what point is an image so blurry the eye stops trying to focus it?

I'm a user experience designer concerned about a new trend of blurring screens when showing a lightbox/dialog box over top (see below). From what I know, blurry images cause the brain to work hard ...
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What software/approach to use to build a graph based on microarray gene expression correlation?

What software to use to build a graph based on microarray gene expression mutual correlation? I have tried Cytoscape`s Reactome FI and a recipe from R bioinformatics cookbook, however, need a more ...
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119 views

How do I import FASTA files into Haploview?

I'm trying to produce a haplotype network and so have decided to use the software haploview. However I'm having some problems importing my sequences into the software. I Have my sequences in a FASTA ...
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51 views

Open Source Variant Caller comparable to GATK Haplotype Caller?

Is there a Variant Caller comparable algorithmically and in performance to GATK Haplotype Caller but Open Source Compliant (non-restrictive use)?
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Workflow for batch analysis of ROI in histology samples

This is a pretty big task, and I have several work-arounds, but I am looking for an efficient way to go from PAS stained slides of lung tissue to defined ROI's over the whole slide (presumably via ...
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Transcription profiling analysis software

I am entering now the field of transcription profiling analysis - and looking for good software to work with the data. I got files with list of genes like this for example: 1415751_at 618.9 0....
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39 views

How to do Sliding 80mer Window search against a database with fasta

I know how to do a 80-mer window search against a single protein ...