Computer programs that aid in the storage, processing, and analysis of biological data.

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Software to calculate Fst from sequence data

I'm looking for a software to calculate Fst from 3 loci DNA data of individuals from a metapopulation. I don't have any prior on the population structure (have no idea of the number of subpopulations ...
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Software for counting fly eggs

Is there any software that could be used to rapidly (quicker than humans) count the eggs laid by Drosophila on a substrate by placing them under a microscope with a camera attached? The eggs are laid ...
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How is a tanglegram calculated?

In this question, it was asked what are some good softwares for calculating tanglegrams. What is a tanglegram? How is it calculated? It looks like some kind of double-dendrogram. Do I get a Nature ...
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Workflow for batch analysis of ROI in histology samples

This is a pretty big task, and I have several work-arounds, but I am looking for an efficient way to go from PAS stained slides of lung tissue to defined ROI's over the whole slide (presumably via ...