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Visualizing secondary RNA structure binding to target

I am designing synthetic ribozymes, and need to see the secondary structure that arises from its flanking arms binding to a target mRNA. I've used Mfold as well as IDT's OligoAnalyzer (Hairpin), but ...
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Web repository to predict secondary structure of protein the the form of H C and E

Is there any website which would take in as input multiple amino acid sequences and output the secondary structure in the form of H(helix) C(coil) and E(strand)? I found this website but it cannot ...
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How to model missing residues on a protein from multiple PDB files?

I have multiple X-ray structures (PDB files) of the same protein. All of them have missing stretches of residues. I want to use all of them to build a single model, with as little missing residues as ...