I am designing synthetic ribozymes, and need to see the secondary structure that arises from its flanking arms binding to a target mRNA. I've used Mfold as well as IDT's OligoAnalyzer (Hairpin), but ...
Is there any website which would take in as input multiple amino acid sequences and output the secondary structure in the form of H(helix) C(coil) and E(strand)? I found this website but it cannot ...
I have multiple X-ray structures (PDB files) of the same protein. All of them have missing stretches of residues. I want to use all of them to build a single model, with as little missing residues as ...