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How do you derive the differential equation for a protein in a cellular model? [closed]

For a cellular model once can use ordinary differential equations to show the change in time of the protein inside a cell. How do you derive such a differential equation for a given protein?
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Recent and good quality articles on systems biology [closed]

I'm a biotechnology student and I have to write a sort of non-experimental thesis (30 pages long) within the end of a three years study. I'm very interested in the "systems biology" field and I'm ...