Tagged Questions

Questions relating to biological theory or theoretical developments that deals with biological processes.

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How does the value of K determine number of local optima in NK model?

BACKGROUND The NK model of fitness landscape considers N states which can interact with K other states. For example N is the total number of genes in a haploid genome and K is the number of other ...
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Where can one find completed and processed Hi-C datasets?

I and a statistics graduate student at UCR, and I am working on Optimal Binning schemes and peak detection in Hi-C data analysis (a dataset that conveys information about proximity of a DNA strand ...
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What are we missing about the real workings of the evolutionary process? [closed]

As a scientist (and a computer scientist at that) my view is that if we cannot simulate a process we have not understood it properly. I have been following the interesting field of Artificial Life for ...
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Help with the Price equation

The Price equation describes mathematically the evolution of a population of units from one generation to the next. $\bar{w}\Delta \bar{z}$ = $Cov (w_i,z_i)$+$E(w_i\Delta z_i)$ I would like ...
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How does Natural Selection shape Genetic Variation?

Background Importance of the additive genetic variance As stated here, the fundamental theorem of Natural Selection (NS) by Fisher says: The rate of increase in the mean fitness of any organism ...
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Is there a program that simulates biology on a molecular level?

Is there a computer program that simulates biology on a molecular level? Software that has rules that simulates the rules of molecular-biology?
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Is there a realistic “family tree” model for the human population?

I would like to do some gene inheritance simulations, and I was wondering if there is an accepted model for what mating looks like in the general human population? I am not necessarily looking for the ...
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Do biological phenomena follow Gaussian statistics?

I have recently entered the life sciences (from physics). I am concerned about the use of p values in the life sciences literature. For example, in this article, they test 9 - 12 rats in a control ...
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Biomolecule , DNA-RNA difference [duplicate]

Why is that a RNA has uracil in place of thymine? RNA could have thymine bases but it has uracil ? What is the reason for the presence of uracil there ?
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What is the distribution of the expected number of lineages in a birth-death tree after time T?

I've been looking at The reconstructed evolutionary process by Nee et al. 1994 and they provide a number of equations dealing with the birth-death process, specifically the "reconstructed" birth-death ...
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System biology and evolution: Book-recommendations

I have relatively good knowledge in evolutionary biology and in population genetics. I am getting more and more interested in the evolution of ... genetic developmental processes gene interactions ...
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Michaelis-Menten equation type - how it is derived?

Can somebody explain how is the following differential equation found? It is about the blood alcohol content. See this article (pages 3 and 4). They say the concentration of blood alcohol ...
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How to understand relatedness in an infinite island model?

My understanding is that the relatedness coefficient in kin selection models measures positive assortment. That is, altruism is more likely to evolve if altruists tend to interact with other altruists....
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Altruism in viscous (asexual) populations

The viscosity of a population is the tendency of offspring to remain near their place of birth. Taylor 1992 ("Altruism in viscous populations") provides a model to study how viscosity affects the ...