All Questions

1
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0answers
180 views

What mammalian cell lines are easiest to grow and transfect?

I'm working with HEK293 cells, which are very easy to transfect. Does anyone have other suggestions for cell lines with very high transfection efficiency? Ideally the chromosomes would also be diploid ...
1
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0answers
54 views

Reverse complement of reconstruction model for assembling reads

One way to assemble fragments produced by DNA sequencing (often called reads) is to seek for the shortest common superstring that contains all the reads of a given set of reads. One model for this ...
1
vote
1answer
34 views

Transplantation of stem cells

During the autologous transplantation of stems cells from bone marrow to produce new blood cells why all the other stem cells other than the one obtained are destroyed?
3
votes
1answer
44 views

Immunity during pregnancy

I have learnt that our immune system distinguishes self from non-self by using MHC. So a mother during pregnancy should also develop antibodies against the fetus as it is also a genetically different ...
1
vote
3answers
344 views

Diffusion across cell membranes

I got this question and don't really understand the difference between the answers. Diffusion is (in cell membrane): a) passive by nature, no metabolic energy is needed b) driven process by ...
1
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0answers
36 views

Hippocampal regulation of hypothalamus

What is the difference between CA1-CA4 hippocampal subfields and dentate gyrus (DG) in negative regulation of hypothalamus? I`ve found only evidence that GR expression is more in CA1-2 and DG, while ...
3
votes
3answers
986 views

Knockdown of long noncoding RNA (lncRNA) - how is it done?

I don't work at the wet lab and don't know all the details about the knockdown techniques. My question is: How lncRNA knockdown is done? For example - you have lncRNA that is functional in the ...
2
votes
0answers
49 views

How to use mechanical microstrainer to extract tissue proteins from human?

Background: There are many methods to extract proteins form human tissues out there. The majority of them use an extraction buffer containing variable concentrations of detergents and protease ...
5
votes
3answers
294 views

Tool for nucleotide alignment with all nucleotide codes (e.g. R, Y, W, S, etc.)?

I have a vector sequence and would like to find the following nucleotide sequence in it. AASYWSRA This query sequence uses several degenerate symbols, defined ...
1
vote
1answer
2k views

How difficult is to renature a protein?

I know of Anfinsen's experiments and I'm aware that some denatured enzymes may regain their lost activity through the removal of the denaturant agent. What I'm unaware of is how rare is it for a ...
1
vote
1answer
58 views

What is the disadvantage of having no anticoagulation after pulmonary embolism?

Is chronic anticoagulation always given after pulmonary embolism? What are the risks or disadvantages if anticoagulation is not given? if terminated early?
3
votes
1answer
145 views

By what mechanism is Streptococcus bovis acting as a risk factor for colorectal cancer?

Streptococcus bovis bacteremia/endocarditis is considered a risk factor for colorectal cancer. What pathophysiological mechanism may link the two together?
13
votes
1answer
879 views

Are human bodies programmed to die?

Following from this question: What is the evolutionary advantage of death?: Is there any evidence that human bodies have systemic self-destruction built into their developmental program? I'm not ...
2
votes
1answer
419 views

Why is the blood pressure in the superior vena cava during inhalation less than during the exhalation?

For further investigation into the progress of the blood pressure, we will measure a patient's blood pressure in the superior vena cava measured during inhalation and during an exhalation. His heart ...
0
votes
1answer
99 views

Are humans more aggressive during a full moon? [closed]

Is it true that we are more agressive during the night when there is a full moon? If true, could this be a remnant from times where we needed to hunt for our food and so could see more at night when ...
2
votes
1answer
242 views

How is transport of glucose into prokaryotic cells different from transport into eukaryotic cells?

I was reading page 92 of Fundamentals of Microbiology, 4th edition, which states In facilitated diffusion, the substance (glucose, for example) to be transported combines with a plasma membrane ...
25
votes
3answers
9k views

Why do eukaryotic organisms have introns in their DNA?

We touched on introns and exons in my bio class, but unfortunately we didn't really talk about why Eukaryotes have introns. It would seem they would have to have some purpose since prokaryotes do not ...
5
votes
2answers
167 views

How does a pinched nerve cause pain (at the molecular level)?

Is this due to pressure differentials in the surrounding tissue? (Is it possible to have a pinched nerve without compression of the surrounding tissues, and does this cause pain?) What are the ...
0
votes
0answers
73 views

What material is recommended for autoradiography cassettes when working with 32P?

So, during radiation safety training, much hullabaloo is made regarding how the high energy beta emitted by 32P produces Bremsstrahlung radiation when striking a high Z shielding material. As such, ...
4
votes
1answer
114 views

What are some examples of scaling laws in biology?

I've seen that metabolic rate scales logarithmically as function of mass for many animals over an extremely large span of parameters. What other scaling laws exist at the individual level?
0
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2answers
168 views

Recent and good quality articles on systems biology [closed]

I'm a biotechnology student and I have to write a sort of non-experimental thesis (30 pages long) within the end of a three years study. I'm very interested in the "systems biology" field and I'm ...
3
votes
0answers
38 views

Can I purify polyhydroxyalkanoates by heating the cells extensively?

Traditional methods of purifying polyhydroxyalkanoates (PHAs) and other bioplastics made by bacteria involve washing the cells with harsh chemicals or strong bases.I'm interested in maintaining the ...
3
votes
0answers
87 views

Why do ants dig surface paths?

A few days ago I observed a corridor built and used by ants that went over a path in fields: Why do they build it? It seems it doesn't bring any considerable protection from the surrounding ...
1
vote
1answer
51 views

“Oblong to Allantoids” … Is it valid?

I read on the text book: The characteristic of Dinemasporium are: superficial, cupulate to Discoid conidiomata with brown satae, Phialid conidiogenous cells that give rise to hyaline, oblong to ...
9
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2answers
158 views

Modularity of transcription factors

I attended a seminar about neurogenesis that presented results for PAX6 as an important TF that contains 3 domains with very distinct patterns of downstream expression. The speaker ended up saying ...
2
votes
1answer
803 views

Why is Sanger sequencing inferior for detecting SNPs in cancer cells?

I am familiar with Sanger sequencing, but at the level of an undergraduate. A lecturer of mine tried to describe Sanger sequencing as losing the sequence information in noise when used to detect ...
1
vote
1answer
377 views

What is solid-phase bridge amplification?

During Illumina sequencing there is a step called bridge amplification by which DNA is amplified by isothermal enzymes. What is this stage, and how does it work?
4
votes
1answer
305 views

How do sharks and other fish conserve and gain water in marine environments?

With the osmolarity of the average vertebrate being around 300mOsml, and salt water having an osmolarity of 1000mOsml, why does the water from the shark not leave to the salt water around it? I ...
4
votes
1answer
458 views

Breeding laboratory mice with cancer; how does this work?

It has recently been brought to my attention that live laboratory mice with specific cancer strains can be readily purchased for medical research. For example, the Jackson Laboratory sells mice with ...
0
votes
1answer
66 views

SNPs mapping into protein

Starting a new project on protein-protein interactions and SNP analysis tool development. I would like to ask how does SNPs is mapped into protein? What does mapping means?
1
vote
1answer
1k views

What would be the best design for spike-and-recovery and linearity-of-dilution validation experiments in one 96-well ELISA plate?

I have searched in the web for a detailed explanation of doing such validation experiment, but unfortunately couldn't find a satisfactory one. I came across the following sources: Thermo ...
2
votes
1answer
43 views

Storing Apples at 30F?

This article about storing apples for the winter says: You do not want the apples' temperature to fall below 30°F (-1.1°C), however, because that will make them freeze and turn to mush when ...
5
votes
2answers
7k views

What is special about the N3 buffer for Qiagen minipreps?

For those who use Qiagen miniprep columns, they may be aware that the P3 buffer is the acetic acid step to neutralize cell lysis. They may also be aware that the Qiagen P3 buffer cannot be ...
1
vote
1answer
81 views

By what mechanism does elevated homocysteine level accelerate thrombin formation?

It has been stated that elevated homocysteine level accelerates thrombin formation. By what mechanism does this happen?
4
votes
1answer
48 views

What is meant by “alien” probe in a microarray?

In my lab we did a microarray to analyze differential gene expression in S. cerevisiae treated with UV irradiation. We are now analyzing the results and one of the up-regulated genes is labeled ...
1
vote
2answers
330 views

PEG-silane treatment: why incubate for 18 hours at 60 degrees Celsius?

I am conducting a biochemistry-related experiment and I have been unable to understand a step which is commonly performed. My aim in this step is to apply a PEG (Polyethylene glycol) silane layer. ...
0
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1answer
58 views

Does anyone know what marsupial this is? [closed]

I know what this is a marsupial, but i'm not quite sure which one. Any thoughts?
2
votes
2answers
289 views

DNA replication Okazaki fragments

I understand multiple origin bubbles; DNA polymerase only synthesizes DNA from 5' to 3' and all that. But what I don't understand is why it has to be in fragments. Yes, DNA is anti parallel, and so ...
2
votes
1answer
90 views

Is RGB diode lighting okay for the eyes?

Is a light source giving off light composed of red, green and blue lights harmful to the eyes? Does it lack any important qualities that other artificial light sources, such incandescent lamps or ...
3
votes
1answer
851 views

Is it possible for a person to become “reinfected” with the same strain of a virus?

If a person contracts a virus, viral conjunctivitis for example, is it possible for the individual to become "reinfected" with the exact same strain of the virus once the person has it treated and the ...
1
vote
1answer
50 views

Are there neuronal firing artifacts produced by head movement?

I'm experimenting with a consumer-grade ElectroEncephaloGram (EEG) sensor and have created the image below using the device. Because the sensor on the device does not use a suction cup, there are a ...
1
vote
2answers
202 views

Is it possible to print humans?

According to this news, scientists can use stem cells to print objects. So say theoretically, is there any possibility to print human beings?
2
votes
2answers
281 views

How are different types of cells created from zygote?

In the process of mitosis that starts from zygote, how do different cells appear? What happens that some cells become one type and some another? For example, is there a cell that divides into a ...
8
votes
1answer
776 views

How strong is spider silk?

Spider silk is pretty darn strong and all sorts of comparisons are made to steel. I'm more curious about the various moduli of spider silk and how it compares to other materials. What is the Young's ...
2
votes
1answer
314 views

Will lipid molecules 'flip-flop' over a membrane without the use of an enzyme?

All of the references to this I can find refer to enzymes like Flippase making it 'easier' or 'more likely' that the translocation will occur, rather than actually make it possible. The following is ...
2
votes
1answer
1k views

Why does yawning impair hearing?

When I yawn I can't hear anything happening around me. I also feel some kind of muscles inside my head contract and hear a faint hum, but it is not loud enough to explain not hearing other sounds. I ...
1
vote
1answer
95 views

How might IVF (and related technologies) alter epigenetic marks?

I was reading up on KCNQ1, which encodes a voltage-gated potassium channel, and I discovered that it happens to be only maternally expressed. This is regulated by KCNQ1OT1, a non-coding RNA, which is ...
2
votes
1answer
308 views

By what mechanism does an obstructed bile duct cause excess fat in the stool?

By what mechanism does an obstructed bile duct (for example gallstones) cause steatorrhoea (excess fat in the stool)?
1
vote
2answers
62 views

Which X-Y chromosomes have the developmental genes for mammals?

I know that for a given mammal, half the chromosomes come from father and half from mother. This is typically denoted as x-y. I've recently read about "toolkit" genes that control how a cell develops ...
3
votes
1answer
335 views

What is an epistasis group?

I have been trying to wrap my head around the concept of epistasis for a couple of days now, and I think I understand it, at least at a basic level, but I still don't understand some of the ways that ...

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