10
votes
1answer
2k views

How does the stem-loop cause intrinsic transcription termination?

In this animation, towards the end (about three quarters) the process of transcription termination is shown. It states that the transcribed RNA forms a hairpin loop (or stem-loop), which halts the ...
12
votes
2answers
175 views

Why is the microbial ecosystem of the gut so susceptible to disruption by pathogens?

From all accounts, it seems as if the Escherichia, Enterobacter, etc. that live and thrive in the human gut are pretty well entrenched. I know that these microbial populations are often analyzed as ...
13
votes
4answers
42k views

Why is DNA replication performed in the 5' to 3' direction?

DNA replication goes in the 5' to 3' direction because DNA polymerase acts on the 3'-OH of the existing strand for adding free nucleotides. Is there any biochemical reason why all organisms evolved to ...
5
votes
1answer
957 views

How does the Golgi Apparatus perform its function?

The Golgi Apparatus is an organelle with a great number of functions, I am particularly intrigued in the role it plays in packaging macromolecules and sending them to their target organelle or to ...
16
votes
1answer
301 views

Why does regular exercise increase brain volume?

It has been shown in several studies that regular aerobic exercise increases brain volume in aging humans. The changes were observed in hippocampus and were correlated with dramatic reduction of ...
10
votes
1answer
311 views

What is the functional and structural distinction between core (H2A, H2B, H3,H4) and linker(H1/H5) histones?

Many explanations of histone biochemistry isn't quite elucidating for the undergraduate student. How does histone structure (dimers, octomers) relate to their specific functions as core or linker ...
7
votes
1answer
149 views

Which human cell lines do not express the GLP-1 receptor?

I need a human cell line that does not express the GLP-1 (glucagon like peptide-1) receptor. I'm working with HeLa cells, do those express the GLP-1 receptor? Which other cell lines exist that don't ...
14
votes
4answers
2k views

Height and natural selection in humans?

I watched the documentary "Evolve" recently and in the segment on "size" Scott V. Edwards, Harvard evolutionary biologist mentioned the idea that humans might evolve to be 7' tall in 'hundreds of ...
22
votes
4answers
3k views

What does the human body use oxygen for besides the final electron acceptor in the electron transport chain?

My biology teachers never explained why animals need to breathe oxygen, just that we organisms die if we don't get oxygen for too long. Maybe one of them happened to mention that its used to make ATP. ...
40
votes
4answers
3k views

Why do plants have green leaves and not red?

I know plants are green due to chlorophyll. Surely it would be more beneficial for plants to be red than green as by being green they reflect green light and do not absorb it even though green light ...
17
votes
2answers
3k views

What is the mechanism behind “acquired” alcohol tolerance?

I can understand natural variation in alcohol dehydrogenase (ADH) in a population leading to variation in rate of inebriation (after controlling for other variables -- e.g., mass, food consumption, ...
14
votes
1answer
878 views

Why do we get runny noses in the cold?

The most annoying thing for me about being cold is a runny nose. Is there an advantage to having a runny nose when cold? What does having a runny nose achieve?
8
votes
2answers
1k views

Alternatives to ethidium bromide for staining small nucleic acids?

While ethidium bromide works well for staining larger single-stranded RNA or double-stranded DNA molecules, it doesn't stain smaller nucleic acids very well. I observed that at around 20 bases and ...
7
votes
1answer
730 views

What is the mechanism of transgene integration (from expression vector to the host genome)?

How does a transgene (in vector) integrate to the host genome? (e.g. in glass bead method, neither biolistic nor agrobacterium). I already cut some parts (NdeI-PciI) of the vector (pUC18) and ...
9
votes
1answer
194 views

What would be the conduction speed of A-alpha fibers, were they unmyelinated?

It's known (Hursh 1939) that myelinated axons exhibit the behavior $v = 6d$, where $v$ is the propagation speed [m/s] and $d$ is the axon diameter [μm]. A related relation for unmyelinated axons is ...
9
votes
1answer
107 views

Are Schwann cells the sole source of myelination in PNS?

Are Schwann cells the only source of myelin for axons in the peripheral nervous system, or are there other neuroglia or other processes that result in myelination of PNS axons?
14
votes
2answers
1k views

What causes REM atonia to be lost in sleepwalking?

I understand that in normal REM sleep the voluntary muscles are in effect paralysed in order to prevent an individual acting out their dreams. This paper indicates that there are likley to be ...
8
votes
1answer
90 views

What are the variables that control/influence the color of oranges(Citrus sinensis)?

I hear that Oranges cultivated in tropical areas of the world tend to be greener when ripe, is that correct? Even the same type of Orange differs in color if cultivated in California or Florida. I ...
7
votes
2answers
200 views

Is “exhaustion” of the Hodgkin-Huxley membrane at constant stimulation a real phenomenon?

I was playing around with a simulation of the Hodgkin-Huxley model using their original parameters for the squid giant axon. By applying a constant stimulation current to the model in resting state, ...
32
votes
4answers
1k views

Can scientists create totally synthetic life?

This particular question has been of a great deal of interest to me, especially since it dives at the heart of abiogenesis.
38
votes
1answer
8k views

Why do Humans not produce Vitamin C like other mammals?

Why do most mammals produce their own Vitamin C? Why do Humans not?
12
votes
1answer
204 views

Abiogenesis: Beyond the research journals as a lead in to discussions on evolution

I just came across this abstract: Aminoacyl-tRNA synthetases (aaRSs) are responsible for creating the pool of correctly charged aminoacyl-tRNAs that are necessary for the translation of genetic ...
6
votes
3answers
261 views

Where can I find the common names for the zoology taxonomy?

Forgive me if my question does not belong here or if I'm using incorrect terms, but I'm not educated in biology at all. I'm investigating the workings of the biological classification system. I was ...
11
votes
1answer
438 views

How do CpG islands remain unmethylated?

In most of the genome CpG sites are pretty much always methylated, but CpG islands are instead often unmethylated. This has been linked to the fact that they often are associated to transcripted ...
13
votes
1answer
7k views

What effect has changing pH and salt concentration on protein complexes?

I'm struggling to find peer reviewed literature that explains the effect of changing the pH and the salt concentration on protein/protein complexes in solution. What effect does the pH and the salt ...
12
votes
4answers
287 views

Online repositories of scanning electron microscope photographs?

I have looked at every single Wikimedia commons photo in the category 'scanning electron microscope'. Unfortunately, I could not find any other repositories of such photos, but I would readily look at ...
7
votes
1answer
160 views

Can oxygen diffuse out through the lungs?

Let's say you accidentally walk into a room pressurized with pure nitrogen (or you're jettisoned into space). Within a couple of seconds, the partial pressure of oxygen within your lungs drops to 0. ...
25
votes
7answers
406 views

Has there been any observation of species adapting the evolution process?

I am very interested in the evolution of the evolution process itself. There are of course a lot of things that influence how evolution will work, but for this question, I am interested in things that ...
10
votes
1answer
130 views

Are these Gram stain substitutions acceptable?

In the context of a Gram stain on a blood smear: Are the following acceptable substitutions and/or what differences could arise by substituting them? Using methylene blue instead of crystal violet ...
11
votes
1answer
142 views

Is Batesian Mimicry a form a parasitism? To what extent is the species with real defenses harmed by the defenceless species?

It seems like Müllerian mimicry would be an example of mutualism because both species would end up being eaten less by predators that only have to learn one pattern of warning symbols. But to what ...
17
votes
2answers
411 views

How is temperature sensed?

Can anyone summarize the mechanism by which when an object of a given temperature is placed in contact with, say, the skin on a human fingertip, the average speed of the particles of the object is ...
3
votes
1answer
68 views

Is there a photobleaching-resistant, cell-permeant viability stain in the far red part of the spectrum?

I am looking for a live-cell–impermeable dye for viability. (The cells cannot be permeabilized and fixed in this experiment.) I would prefer with excitation and emission spectra similar to Cy5, but I ...
9
votes
1answer
533 views

Is trembling an advantageous response during periods of anxiety?

I originally had planned to ask about whether there was any biological truth in the popular phrase "shivering with fright". However, after doing a fair bit of googling it seems that there is a lot ...
16
votes
2answers
344 views

Why would diffusion be faster across a non-specialised tissue?

The standard protocol for a person experiencing chest pains is to chew a 300mg aspirin tablet, the argument being that chewing rather than swallowing the tablet results in the aspirin entering the ...
24
votes
5answers
721 views

Why do we age? or Do we have a theory of senescence?

There seem to be a number of ideas about why we age. Hypotheses include the gradual accumulation of cell metabolic products affecting organism function and the reduction of telomere length during cell ...
9
votes
1answer
100 views

What is the base cancer rate for an arbitrary carcinogen?

Are all carcinogens equally potent? Is the relationship between dose and probability of cancer roughly equal, or are there some carcinogens that provoke cancer significantly more than their cousins?
25
votes
2answers
448 views

Is there evidence that some non-human species perform sexual selection based primarily on intelligence? How do they do this?

I'm a biology amateur, but it seems like sexual selection is almost always performed based on physical characteristics, the outcome of physical contests, or some sort elaborate courtship. But do any ...
8
votes
1answer
314 views

Coincidence that navel is near the womb?

The attachment point of the umbilical cord in a baby girl is very close to where her own baby would develop. Is there something in the evolutionary history of mammals that explains this, or some ...
9
votes
1answer
541 views

Why are there nail growth differences between humans and other mammals?

When a cat is growing, his nails are growing with him to some extent. A grown cat has a fixed nail length that is not extending. By contrast, human finger nails just keep on growing, so we have to ...
15
votes
6answers
876 views

Could Junk DNA be used as a Turing Machine by nature?

In what ways has DNA been studied to see if there a "programmable" aspect to it? Has nature produced anything resembling a Turing machine within the cell, perhaps using the "junk DNA" as its code? I ...
43
votes
3answers
2k views

Why did the process of sleep evolve in many animals? What is its evolutionary advantage?

The process of sleep seems to be very disadvantageous to an organism as it is extremely vulnerable to predation for several hours at a time. Why is sleep necessary in so many animals? What advantage ...
12
votes
2answers
275 views

Why was it so hard to decode the corn genome?

My teachers growing up told me it was impossible to decode the maize genome. But yet its been done. Why was decoding the genome so significant, and what made it so difficult?
8
votes
1answer
2k views

Effects of Polyphasic vs Monophasic sleep in humans

Why do humans practice monophasic sleep cycles? When altering one's circadian rhythm to a Polyphasic sleep schedule, how much would that affect development? Is Monophasic sleep (once per day) ...
10
votes
2answers
712 views

Why are restriction enzymes not frozen?

We all know restriction enzymes are proteins, but we never freeze them. They are instead provided in high glycerol containing solutions by companies and stored at -20C. Is there a reason why this is ...
13
votes
3answers
672 views

How many human proteins have a solved 3D structure?

I was wondering how many human proteins have a solved 3D structure. Is there a database with only human proteins? I looked at pdb but couldn't find a filter.
18
votes
2answers
389 views

Smallest viable reproducing population

What is the smallest viable reproducing population, such as in a human population. By viable I mean a population which keeps genetic defects low (enough). A very strongly related question: what is ...
14
votes
3answers
509 views

What is the most difficult feature to explain evolutionarily? [closed]

I wonder what are examples of organs/structures/behaviours/cooperation that evolutionary biologists themselves find most difficult to explain -- to explain how they could appear evolutionarily -- ...
7
votes
1answer
338 views

To understand why satellite cells are genetically inactive in Barr body

DAPI is used as a stain for DNA heterochromatic and euchromatic regions. The Barr body is heterochromatic. In the slide of a normal human female cheek's somatic cells, there is apparently no other ...
7
votes
1answer
713 views

What do the variants on the PolyT sequence mean?

My son has been diagnosed with Cystic Fibrosis. I am not looking for medical advice regarding his condition, but I am very interested in understanding the genetic causes of his condition. In ...
2
votes
2answers
1k views

What is the Giemsa staining of chromosomes?

I got the question in my exam and wrote the following and I do not understand what is wrong in it: Giemsa staining is a staining method to stain particularly malaria and other parasital diseases. ...

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