7
votes
1answer
219 views

Linkage and LD: quantitative or qualitative?

My understanding is that the concept "genetic linkage" can be expressed in quantitative form, like: A predisposing gene X was found in close genetic linkage to Y. ...
7
votes
2answers
436 views

What is the biology behind a skin “mole”?

Are the dark marks aka "moles" on our skin a patch of dead cells? If so, why is it not cleared over time? In a (probably) similar vein, why do scar marks from injuries remain long after new cells ...
2
votes
2answers
98 views

Consensus codon optimization by organism

Does a public database exist that contains this information? I'm trying to make a simple gene annotation program that will let me input a DNA sequence and then optimize it based on one of these tables ...
8
votes
1answer
957 views

Do any animals other than humans undergo menopause?

Do any animals other than humans undergo menopause? Also, is there any difference between animals in captivity and animals in the wild as regards menopause? For example, even if menopause has been ...
5
votes
1answer
909 views

What's the opposite of a thermophile?

Thermophiles, heat-loving organisms, have been a popular topic of research for decades due in large part to the utility of their enzymes in various chemical reactions (Taq Pol single-enzymedly made ...
2
votes
1answer
100 views

Mouse meta-globin mRNA problem

This is an mRNA strand of mouse meta-globin: 5'-ccccagauacggaauucgaau-3' A) Which small RNA (below) is most likely to regulate expression of meta-globin? ...
6
votes
1answer
84 views

number of RNA pol II molecules in a given human nucleus?

Does anybody have any estimate on the number of RNA pol II molecules in the nucleus of a given human cell? For example, how many RNA polymerase type II protein complexes would there be on average at a ...
7
votes
2answers
162 views

How was the guided daily amount (GDA) calculated?

We are constantly shown nutritional information on food packaging stating this food contains "x" amount of your guided daily amount. A linked to the values is here. How were these values calculated? ...
4
votes
2answers
61 views

Main methods used to predict functional annotations in GO

Can someone provide me some information about the main method used to predict the inferred electronic annotations in Gene Ontology?
7
votes
1answer
97 views

Can one dendrite pass through another?

While tracing dendrites on EyeWire I encountered the following situation. They belong to an Orientation Selective Ganglion Cell. It's the first dendrite I've noticed with such a clear 'hole' in it, ...
1
vote
2answers
212 views

Can someone identify this bird?

We recently found a nest in the back garden and a little bird inside. Can you help us identify it? The nest is quite small like the bird so we are wondering whether this is the parent or a baby chick. ...
5
votes
3answers
543 views

When to measure resting heart rate and blood pressure for following day-to-day trend?

I'd like monitor my resting heart rate and blood pressure to see how they are affected by regular cardiovascular training and other events in life. When should I take the measurements in order to ...
5
votes
4answers
721 views

Could someone recommend an introductory book on epidemiology? [closed]

I'm hoping to learn the basics of epidemiological methods, terminology, etc. I come from a background in statistical economics, and I'm moving into the economics of public health. I don't know if ...
6
votes
2answers
2k views

What happens to snakes that swallow rodents as a whole?

As we all know, a few species of snakes swallow rodents as a whole. My question is what happens to the teeth and bones of these animals? Won't they cut into the flesh of the snake and hurt it? Are the ...
10
votes
1answer
171 views

What advantage would the initial 'donor' in horizontal gene transfer by conjugation have received?

I am struggling to think why horizontal gene transfer between bacteria would have persisted during the course of evolution as surely it puts the 'donor' at a disadvantage? For example, consider a ...
11
votes
4answers
1k views

Has there ever been an attempt to create nutritionally tailored food for adult human consumption?

For all domestic animals, and for all animals kept in laboratory, complete and precise composition of perfect food is figured out (cat food, dog food, cattle, rats, laboratory monkeys and apes) -- ...
8
votes
2answers
211 views

Solution based measurement of Solvent-Accessible Surface Area of macromolecules

The Solvent-Accessible Surface Area (SASA) is a valuable metric for looking at protein folding and protein-protein interactions. However, this measurement is typically done by calculating the SASA ...
2
votes
1answer
56 views

Measuring the density of surface antigens

I'm trying to get a sense of the variety of methods used for determining the number of cell surface antigens and receptors. This is notably different from determining the affinity of these surface ...
5
votes
2answers
92 views

How extensive is CD47?

CD47 aka the "don't eat me" signal has recently been claimed to be expressed on all tumor cells. This doesn't seem to corroborate with other cell-biology experiments. On what other cells is CD47 ...
8
votes
2answers
186 views

Is there a dominant gene for right-handedness?

Has there been any definitive research about handedness being genetic? Also, why is right-handedness clearly dominant in humans? I'm interested in evolutionary theories, as well as any molecular ...
9
votes
3answers
393 views

Source of DNA sequences

I'm working on a project where I am taking DNA sequences and translating the codons into musical notes. I have some good ideas of how to do this, I'm just not sure what sequences to work with. My case ...
4
votes
2answers
148 views

Is it possible to grow any kind of plant soilless (hydroponics)?

Hydroponics is a subset of hydroculture and is a method of growing plants using mineral nutrient solutions, in water, without soil. [wikipedia] My question is if is it possible to grow any kind of ...
10
votes
2answers
422 views

What is the highest competency possible for E coli?

I am looking to find a highly competent E coli strain. I am making a library of a ~6.6kb plasmid and I am not getting high enough efficiency. Does anyone have a suggestion of a strain/protocol with ...
6
votes
3answers
384 views

What's the use of DNA sequencing results?

Suppose I sequence DNA of some organism (a human perhaphs) and now I have the entire DNA "string" - the sequence of nucleotides. What's the use of that? It's just a "string" where nucleotides encode ...
14
votes
2answers
13k views

Possible? When a pregnant woman suffers an organ damage, fetus would send stem cells to the damage organ to help repair it?

I am quite sure that there is this blood-placental barrier between the mother and the baby so that nothing (except a type of antibody) can pass through it. But I remember reading somewhere that when ...
11
votes
3answers
127 views

How do baby animals that primarily subsist on cellulose get their initial gut flora?

In the case of mammals like giraffes and koalas, is that bacteria common on the plants they eat so when a baby starts to try to stick something besides its mother's milk in its mouth, it can't digest ...
21
votes
4answers
2k views

How do trees manage to grow equally in all directions?

I was walking down a road with these beautifully huge trees when this question occurred to me. Large trees with many thick branches have to grow equally in all directions, or they would tip over. Is ...
11
votes
1answer
2k views

On the genetics behind caste marriages

I am in India where it is typically a custom to marry within one's caste. Basically the caste system originated with roots in people's professions - Each of priests, carpenters, troupers, etc had a ...
31
votes
4answers
2k views

What exactly are computers used for in DNA sequencing?

I've thoroughly read the Wikipedia article on DNA sequencing and can't get one thing. There's some hardcore chemistry involved in the process that somehow splits the DNA and then isolates its parts. ...
14
votes
1answer
560 views

How fast will cells lyse under hypotonic conditions?

Routinely, lysis of cells with hypotonic solutions is carried out along with some physical (douncing) or enzymatic (lysozyme) method to break open the cells. If one were not to do any of these and ...
12
votes
1answer
7k views

What is the significance and method behind Ramachandran plots?

My PI showed a Ramachandran plot in class today with minimal explanation, but I'm interested in finding out more. I understand that the Ramachandran plot shows the relation between the omega phi and ...
5
votes
3answers
143 views

Measuring reverse transcriptase activity in E. coli

Goal: To quantify the HIV-1 reverse transcriptase (RT) activity for a number of mutated RTs. Idea: Put RT into a vector in E.coli. Deliver GFP mRNA to E.coli. RT will process the mRNA. The ...
10
votes
1answer
341 views

Foveal ganglion cell density (Tay-Sachs Disease)

I’m currently reading on Tay-Sachs disease and have stumbled upon something regarding the typical “cherry red” macula symptom. On the one hand it is mentioned that the macula is almost devoid of ...
10
votes
1answer
145 views

What determines when a virus becomes a “new strain”?

The reason we cannot find a cure for the common cold is because viruses mutate rapidly. Where do the mutations occur in the DNA/mRNA of viruses and does this have any effect on the protein level? what ...
20
votes
1answer
573 views

How did viruses come to be?

My question is out of curiosity and got me thinking. How did viruses with the head, tail and tail fibres actually evolve? These viruses look more like machines than biological entities. Are there any ...
8
votes
1answer
126 views

Is it the sphincter that flexes when a human pushes a bowel movement?

Of course the sphincter muscle is at the exit point. To use a toothpaste tube analogy, if I want to squeeze out some toothpaste, it does me little to no good to jostle the nozzle; I need to squeeze ...
8
votes
4answers
2k views

What's the aim of genetically modifying of foods/organisms?

On news, articles etc. experts talking about Genetically Modified Foods and Organisms often mentions about their disadvantages like, their potential to harm human health allergies may become more ...
12
votes
3answers
242 views

How do we know that dinosaurs were related to lizards and/or birds?

Do we clearly know what the living closest relative of the dinosaurs are? And connected to the first question, in scientific manner how do we know these relationship between extinct species and living ...
4
votes
0answers
108 views

Dimensionless number for blood volume

Comments from the question How is the blood volume of a living organism measured without killing it? by @Nico discussed that the time of blood recirculation scales with the size of the organism. I was ...
13
votes
1answer
106 views

Does a theory exist for the formation of thylakoid structure?

I'm interested in how the structure of the thylakoid forms into its characteristic highly rugose stacks of grana. What causes the thylakoid to invaginate and self-associate, albeit with what appear to ...
13
votes
2answers
476 views

Why are there N's after Sanger sequencing?

After sending a DNA sample for sequencing, the resulting sequence had N's in the beginning and end of the sequence. I know the N's mean that the computer can't tell what the base pair is, but why is ...
-1
votes
1answer
367 views

How To Avoid Macro-Evolution Confusion? [closed]

I regularly encounter students who believe humans came from amoebas and when asked why they often say Macro-Evolution has been scientifically proven. Macro-evolution is defined as evolution at or ...
2
votes
2answers
6k views

Can all mammals swim?

When I checked it seemed trivial to answer: yes, all mammals can swim. But research on the internet provided different information. I found: people and primates cannot swim, but can be taught how to ...
13
votes
2answers
1k views

How does a tree trunk sprout and grow after being cut?

After I cut trees into logs and remove the branches in winter, they start growing. They sprout out and grow completely normal looking stems and leaves and maintain them all summer. The sprouts mostly ...
5
votes
1answer
206 views

PCR primer in highly repetitive region

Is there any way to design a PCR primer if region of interest is highly repetitive (tens of kilobases only SINE's & LINE's)?
7
votes
3answers
278 views

Weighing 2 vertical halves of the human body

I had this thought while bathing: Assume a perfectly developed physical human body and anatomy in terms of size, dimensions and proportions. In theory, if I cut the body vertically into two exact ...
7
votes
3answers
506 views

Protein Biology Cheat Sheet

I'm looking find a cheat sheet for protein biology to stick on my desk to remind of some of the key principles of protein biology. I seem to remember the specific and complex principles in protein ...
4
votes
3answers
22k views

Small worm living in some kind of cocoon, what are these animals?

I am curious what animal is this. It is/lives inside some kind of cocoon, about 1 cm in length. They are attached to walls and to the ceiling, but sometimes they fall off. Inside the structure there ...
15
votes
3answers
1k views

Do probiotics survive digestion?

Pretty much this. I've been wondering if any of the yogourt and other "health" foods containing living probiotic cultures survive digestion to populate our intestines? If so, is there peer-reviewed ...
5
votes
2answers
187 views

First pass protein structure prediction

I'm working with a protein that doesn't have any homology to other proteins so it will likely require ab initio structure prediction. However, since I don't work for a structure prediction lab and I ...

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