12
votes
0answers
131 views

What have the L-systems (Lindenmayer systems) been actually used for in biology?

Wikipedia: An L-system or Lindenmayer system is a parallel rewriting system and a type of formal grammar. L-systems were introduced and developed in 1968 by Aristid Lindenmayer, a Hungarian ...
11
votes
0answers
146 views

Selection for less efficient egg transfer in Human Botfly life cycle

I have heard that the Human Botfly transfers its eggs through other invertebrates [1], and it strikes my curiosity that if an insect could simply land on its host directly to deposit its eggs, then ...
9
votes
0answers
115 views

Standard practice for generating rarefaction curves from Next Generation Sequencing data

We have a few million 18S reads from a particular environment. The reads have been clustered into Operational Taxonomic Unit (OTU), and the OTUs annotated against a reference database. To generate a ...
9
votes
0answers
620 views

Evolutionary reasons why you cannot tickle yourself but masturbate

There are obviously good reasons that explain why you cannot tickle yourself (see e.g. here). This got me thinking why it is possible to masturbate... Wouldn't it make more sense to not being able to ...
9
votes
0answers
166 views

At which step apply a detection filter when preprocessing microarray data? (Before/After normalization, batch effects removal)

I am trying to understand what is the best practice when preprocessing microarray data using a detection filter (on scanner p-value). Suppose I have a microarray dataset that I have to normalize with ...
8
votes
0answers
301 views

Contact Inhibition of Cell Division: Signaling Pathway

The following article refers to contact inhibition of cell division in epithelial cells, specifically MDCK cells: Collective and single cell behavior in epithelial contact inhibition. In their review ...
8
votes
0answers
106 views

How to define “Quasifixation” in continuous approximation of finite population?

Background Many models including the famous very first models derived by Sir Ronald Fisher in his early career, assume infinite population size. In an infinite population, an allele can rise in ...
7
votes
0answers
127 views

Identification of a mammal in cage

This unidentified animal was trapped in northern part of Kerala State India. Following loss of domestic fowls and suspecting toddy cats a trap was placed and this unidentified animal was trapped. No ...
7
votes
0answers
86 views

What causes the range of severity of neurological deficits in Down's syndrome?

It's known that the severity of symptoms caused by a trisomy 21 varies from individual to individual. Part of the explanation for this range of severity is the finding that 94% of Down's syndrome ...
7
votes
0answers
113 views

What is basis of multifunctionality of “master glands” in the endocrine system?

I have just started reading about the endocrine system and I am having some difficulty understanding the basis of distribution of glands and associated hormones. I am using multifuntionality to ...
7
votes
0answers
243 views

What bacteria shed harvestable energy from root zone organic matter?

I recently heard of a successful effort that harvests energy from soil at plants' bases due to apparently bacterial breakdown of wastes from the plants: Via photosynthesis a plant produces organic ...
6
votes
0answers
42 views

Optimal pH of protein buffer? Basic principles to adjust buffers according method and analysis

Protein buffers such as PBST, which is used in western blotting, are normally adjusted to pH 7.4. When I try to find why, I find some information about optimal pKa for protein stability. Im not sure I ...
6
votes
0answers
168 views

Is there an evolutionary basis for why women mature faster than men?

Females develop both physically and mentally earlier than males do. For example; females start puberty at an earlier age than males, and females brains mature more quickly than male brains. Girls ...
6
votes
0answers
68 views

Variance in Fst in the infinite island model

The most famous result in the study of structured populations come from Sewall Wright. He showed that in an island model, where each subpopulation is of size $N$ and the migration rate is $m$, then ...
6
votes
0answers
248 views

Is there a karyotype database for human cell lines?

I'm looking for the karyotype of a specific cell line. Some karyotype are well known, such as HeLa or some carcinomas, but some are very hard to find, such as LG2 (B cells). Is there a database ...
6
votes
0answers
76 views

Identity by descent among unrelated individuals

I was reading a couple of papers which talk about IBD (Identity by descent) among unrelated individuals (for eg. http://www.pnas.org/content/109/4/1193.long). However they do not seem to clearly ...
6
votes
0answers
75 views

How to measure Na/K channel activation at the membrane level?

Assume that there are two different signals occurring on the ECG - during depolarization and repolarization in the standard ECG. I was advised not to use the standard ECG in measuring the exact ...
6
votes
0answers
57 views

Effect of Aging on SA node's sympathetic fibers

I am trying to understand the effect of aging on the sympathetic fibers of SA node. I know that aging shifts the vagal curve to left in frequency due to aging. However, I am interested if aging has ...
6
votes
0answers
74 views

Does preservation in ethanol alter leaf litter mass?

I have benthic samples that were collected with an Ekman dredge from some small ponds. The samples contain quite a bit of coarse particulate organic matter (CPOM, basically dead leaves). I would ...
6
votes
0answers
136 views

Comparative cost of RNA-seq vs sequencing full length cDNAs

I am in the process of assembling and annotating the genome of a non-model organism, using almost exclusively short read (paired-end Illumina) data. Throughput is one obvious benefit of these data (...
5
votes
0answers
48 views

The Perplexing Trilobite: What is the Evidence Supporting The Hypothesis That They are Not Crustaceans?

In the field of paleontology, one question that's really bugged me (er, no pun intended) of late is why the subphylum/class Trilobitomorpha/Trilobita is off on its own branch of the Arthropoda phylum, ...
5
votes
0answers
37 views

How to estimate heritability from breeding data

I have a lot of plant-breeding data (tens of thousands of results) that are composed of phenotypes of parents and offspring. The plants however went trough years of selection and it is not balanced. ...
5
votes
0answers
35 views

Why do emperor penguins breed during the antarctic winter

No land animal, and I think no sea animals either, stay in the antarctic during winter - except for one: The emperor penguin, which does not only stay there, but its prolonged stay involves 4 months ...
5
votes
0answers
51 views

Why do viruses last longer on hard surfaces than porous ones

All the papers I've read about survival of viruses outside of the host refer to longer survival times on hard surfaces without explaination. As a layman I would have thought that a virus (who's main ...
5
votes
0answers
40 views

Do Asian giant hornets (Vespa mandarinia) prey on other nests of Asian giant hornets?

Asian giant hornets are known to attack nests of other bees and wasps, but should they encounter another nest of their own, would they attack it?
5
votes
0answers
39 views

Why do Arctic predators accumulate vitamin A?

Top predators in the Arctic are known to accumulate vitamin A, often to levels that are toxic for human consumption. A 2012 study by Senoo, Imai, et al. found that the livers of several predator ...
5
votes
0answers
56 views

Are high sounds worse for your hearing than low sounds?

From about 80 dB it is possible to suffer loss hearing after a couple of hours. But does it make a difference what frequencies those sound waves are or is it just the volume of the sound in dB that ...
5
votes
0answers
135 views

What will happen when humans are injected with plant growth hormones

Will plant growth hormones (PGHs), (let us consider auxins for example) poison our body or not? I do realise that when you eat a shoot, auxins get digested and are less likely to be poisonous but when ...
5
votes
0answers
41 views

How much of the genetic differences between humans and chimpanzees are due to genetic drift?

Both natural selection and genetic drift play a part in changing our DNA over time. Are there trustworthy estimates how much of the differences over the whole genome between us and chimpanzees are due ...
5
votes
0answers
46 views

How can microarrays be used to quantitatively determine level of gene expression?

This is probably a stupid question because I don't fully understand how microarray experiments work. I'm trying to understand how microarrays work but I'm confused about something which I can't seem ...
5
votes
0answers
59 views

What is the reason for fear induced defecation?

I started to handle mice for my job and noticed that they tend to defecate and/or urinate when they are scared. The fear is induced by me, because I need a long time (due to inexperience) to grab the ...
5
votes
0answers
101 views

Why do mammals produce more carbon dioxide than insects?

I understand that mammals produce more carbon dioxide than insects on a gram per gram basis, but why is that? I'm thinking it might be because mammals are warm-blooded, which require more energy ...
5
votes
0answers
56 views

Do “scars” in humans replace all the skin layers or only some layers?

When someone has a cut or surgical incision that results in a "scar", is the scar tissue replacing all 3 layers of the skin (epidermis, dermis, hypodermis)? Or only the first one or two of them?
5
votes
0answers
28 views

Why sympathetic and parasympathetic nerves originate in different parts of CNS?

Curious if there is a reason for having: parasympathetic nerves originating from brain stem and pelvic part of spinal cord sympathetic nerves originating from thoracic and lumbar parts It looks ...
5
votes
0answers
53 views

Is high metabolism linked to high evolutionary turnover?

I recently read The Dinosaur Heresies by Robert T. Bakker, a 1986 popular science book presenting arguments for an active lifestyle and high metabolic rate in dinosaurs. One of the arguments that ...
5
votes
0answers
193 views

What traits make mountain goats so well adapted to mountain living?

I've never really understood how mountain goats manage to survive so well in mountainous regions. I've seen them scale almost sheer cliff faces with apparent ease, and they can almost sprint ...
5
votes
0answers
30 views

Can we predict a person's tolerance to cold exposure during excercise?

Being an amateur athlete and student of anatomy I've always wanted to know if there is a formula for determining an unconditioned body's tolerance to cold temperatures while exercising. I know the ...
5
votes
0answers
43 views

What type of tree is this?

I photographed this group of trees a couple of years ago at the northern tip of Prudence Island in Narragansett Bay. Any idea what species these are?
5
votes
0answers
246 views

What are the branches of system ecology?

What are the branches of system ecology that scientists research in nowadays? Or what can system ecology can applied to, or be used? I have read its Wikipedia page, but sadly it doesn't answer my ...
5
votes
0answers
74 views

How does a garlic clove thrive inside a closed refrigerator?

A garlic clove has been growing very well inside a closed refrigerator. It has developed beautiful green stalks, which I think are the equivalent of leafs. Since they are green, I assume they ...
5
votes
0answers
54 views

Two different Leucochloridium infected snails - different species?

In the last three days, I have found two snails infected by some species of Leucochloridium. I found them in my garden in the south-west of Sweden. Now I'm wondering if they are the same species or ...
5
votes
0answers
48 views

Is it possible that the vapour form of propylene glycol could lower a humans blood oxygen saturation by the manner in which N2O does?

My understanding is that by inhaling nitrous oxide leads to the body not being able to take in as much oxygen as it usually would. Is it possible that a heavier soluble gas such as the vapour form of ...
5
votes
0answers
105 views

The ring formation of ringworm

I know ringworm is caused by a fungus on the skin, nails or scalp but what causes the rash to form as a ring instead of like a normal spread out rash?
5
votes
0answers
108 views

Phylogenetic method to detect shift in mean of continuous variable

I am currently working on a project where I study the change of a continuous morphological variable with body size (measured as body weight) across diverse taxa (insects, spiders, lizards, frogs). In ...
5
votes
0answers
107 views

Where can I get numerical data for the PAR (photosynthetically active radiation) curve?

I'm trying to do some rough figuring to calculating efficiencies of various light sources for growing plants. I'm hampered, however, by the lack of a curve to multiply by the spectrum of light ...
5
votes
0answers
383 views

Genetic expression in interspecific hybrids

Referring to interspecific hybrids, I have the following two questions:- Quoting from wikipedia:- The offspring of an interspecific cross are very often sterile; thus, hybrid sterility ...
5
votes
0answers
88 views

effect of background selection on promoter regions compared to distant enhancers?

Has anyone looked at the effect of background selection on the levels of conservation of promoter regions compared to distant enhancers? Do promoter regions have a higher conservation due to ...
4
votes
0answers
52 views

Is there a naturally occurring mechanism in the body for cleaning plaque buildup in arteries?

Is there a naturally occurring mechanism in the body for cleaning plaque buildup in arteries ?
4
votes
0answers
96 views
+50

Why does human chromosome 19 have the second highest number of protein-coding genes?

While chromosome 19 only is the 19th largest autosomal chromosome, it contains 1440 protein-coding genes, and thus has the second highest number of protein-coding genes of any human chromosome. For ...
4
votes
0answers
18 views

Reason for variation in the site of onset of edema

What is the reason for the observed clinical difference in the earliest site of onset of edema in cases of different etiologies? For example, in Congestive Heart Failure, it appears initially as ...

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