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This may or may not be possible, depending on what proteins you are considering. Generating a PDB file means predicting the structure of the protein. There are no methods for predicting protein folding accurately from plain sequence data, so you will need some experimental data on the structure of your proteins. If your proteins have not been structure ...


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The residue numbering convention in the PDB is more-or-less entirely up to the depositor of the structure. While generally speaking sequential numbers are next to each other, there is no guarantee of that fact. For example, the PDB allows for what are called "insertion codes", which are extra residues which interrupt the regular sequence progression. For ...



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