6,771 reputation
21247
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location Marseille, France
age 34
visits member for 2 years, 2 months
seen 11 hours ago

Elected moderator on Unix & Linux. Feel free to @ping me in chat if there's anything I can help you with.

I am a computational biologist with a background in biology, not computers. My PhD work was on gene prediction and comparative genomics but my current research is in systems biology, specifically protein-protein interaction networks.

profile for terdon on Stack Exchange, a network of free, community-driven Q&A sites


Oct
6
comment Open Source Variant Caller comparable to GATK Haplotype Caller?
You could also try asking on biostars.org.
Sep
30
awarded  Explainer
Sep
30
comment Is Sugar a stimulatant or a weak sedative?
Could you provide a summary of these arguments? It's better to have the answer here rather than on another site which is behind a paywall (not everyone has institutional subscriptions)
Sep
29
comment What is the difference between a fixed substitution and a single nucleotide polymorphism (SNP)?
I'd need more context to be sure but what makes you think that the substitutions were only a single nt? Also, that sentence could be read as having found 464 SNPs, of which 430 were fixed.
Sep
24
awarded  Autobiographer
Sep
24
comment Which C. elegans would be appropriate for general study?
What question do you want to answer? The "appropriate" decision will depend on what exactly you want to investigate. What conclusions will you want to draw from your research?
Sep
23
comment Does this “fleeing spiders leaving fields of webs” phenomenon have a name?
I doubt it will be called anything specific. It's just spiders fleeing a flood like any other animal.
Sep
22
revised Where do the electrons and protons formed from biological reactions go?
edited body
Sep
22
comment BLASTn vs ORF tools
@Raghavakrishna I'm sorry but I still don't understand. The details always depend on what you're actually doing. If BLAST gives you a hit, then that's a hit. Whether or not that is biologically relevant is another question and I can't answer that unless I know what question you are asking.
Sep
21
comment BLASTn vs ORF tools
@Raghavakrishna why would they be false positives because they align against the - strand?
Sep
19
revised Did the Britons 100 years ago have different intestinal flora and fauna?
edited body
Sep
19
answered BLASTn vs ORF tools
Sep
19
comment Finding proteins in DNA sequence
@Raghavakrishna I still don't understand what you're asking. Sequencing projects sequence one strand and call that the + strand and then extrapolate the sequence of the - strand. If you have a question about this, please ask a new question so you can explain it clearly and get a full answer.
Sep
19
answered Did the Britons 100 years ago have different intestinal flora and fauna?
Sep
19
revised peptide MHC microarray
deleted 29 characters in body
Sep
19
comment Finding proteins in DNA sequence
@Raghavakrishna what do you mean? What method? If you mean the two tools I mentioned, exonerate searches both strands by default and genewise does so if you give it the -trev flag.
Sep
18
awarded  Enlightened
Sep
18
awarded  Nice Answer
Sep
17
revised How long does a mosquito take to land on a host, bite, and fly off?
added 1 character in body
Sep
16
comment Why aren't introns found on the ends of pre-RNA?
@user137 exactly. Being an exon has nothing whatsoever to do with being a coding exon. You even have transcripts that don't code for protein at all but that contain introns regardless.