133 reputation
3
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location United States
age 31
visits member for 2 years
seen Aug 1 at 5:16

Jul
29
comment Recommended sequence clustering algorithm for transcriptome data
Yeah, memory is going to be the limiting factor. I did just set up CD-Hit on my machine, so I'll give that a try.
Jul
29
asked Recommended sequence clustering algorithm for transcriptome data
Oct
3
awarded  Scholar
Oct
3
awarded  Supporter
Oct
3
accepted Which way to run BLAST?
Oct
3
comment Which way to run BLAST?
Thanks for your response. I'll be using the BLAST results to construct a "hints" file for use with the Augustus gene prediction program, so this isn't generating my final gene model. That said, it still might be better to use one of the programs you mention.
Oct
3
awarded  Student
Oct
3
asked Which way to run BLAST?