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 Tumbleweed
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  • 9 votes cast
Apr
27
comment Ribosomal DNA references sequences
Yes, I have tried the usual sources, my biggest question was whether they had a "reference" genomic 18S rDNA sequence, or if the NCBI sequences themselves were reference sequences.
Apr
27
accepted Ribosomal DNA references sequences
Apr
27
asked Ribosomal DNA references sequences
Mar
6
awarded  Tumbleweed
Feb
27
asked How to get chemical structures in PDB format?
Dec
26
accepted Clustal Omega - convert from distance into # of substitutions
Apr
23
comment How to determine whether the energy of a stem-loop fold is significant or not?
@caseyr547: I am working on a substring of mRNA that is thought to fold independently of the other substring, because it is not complexed with other proteins.
Apr
23
awarded  Commentator
Apr
23
revised How to determine whether the energy of a stem-loop fold is significant or not?
clarified what kind of stem loop i was referring to.
Apr
23
comment How to determine whether the energy of a stem-loop fold is significant or not?
Yes, it is an RNA. Allow me to update the original question. Many apologies for being unclear.
Apr
22
asked How to determine whether the energy of a stem-loop fold is significant or not?
Mar
25
comment Clustal Omega - convert from distance into # of substitutions
Haha, it looks like I will have to do that in the end. I was trying to see if I could take the lazy route and not write a few lines of code. Thank you for all of your input nonetheless!
Mar
24
revised Clustal Omega - convert from distance into # of substitutions
included how many sequences i am working with
Mar
24
comment Clustal Omega - convert from distance into # of substitutions
Sure, let me update the original question.
Mar
24
asked Clustal Omega - convert from distance into # of substitutions
Mar
21
comment Are there tools for automatically parsing glycan names into tree structures?
No problem, I can brush up on my Java (it's been 6 years since I last used it). Thank you very much!
Mar
21
awarded  Yearling
Mar
21
comment Are there tools for automatically parsing glycan names into tree structures?
Ah! I misunderstood, my apologies. Would you be kind enough to share that code?
Mar
21
comment Are there tools for automatically parsing glycan names into tree structures?
Update: I tried KEGG Draw, but it doesn't accept glycan IUPAC names.
Mar
21
comment Are there tools for automatically parsing glycan names into tree structures?
Thanks nonetheless!