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PhD student in chemical engineering


Apr
17
comment Are there any examples of sudden leaps in evolution?
I believe that the technical term is a "Hard Sweep".
Apr
10
comment What is the translation termination efficiency in mammalian cells?
From what I understand the eRFs are not perfect but they still work better than RF1 and RF2 which allow for a non trivial amount of readthrough.
Apr
10
comment What biochemical molecule viewer allows for changes in amino acids and resulting tertiary structure?
Pymol should have that capability... try Gromacs
Apr
9
comment What are the biological mechanisms behind the increase in cancer risk and alcohol consumption?
Asian Glow is linked with cancer. Actually tackling alchol related cancer is a fairly hot topic these days.
Apr
9
comment What are the biological mechanisms behind the increase in cancer risk and alcohol consumption?
I agree damaged is caused by acetaldehyde (also the cause of asian glow) but I believe that your selected enzyme is incorrect.
Apr
9
comment How do you store membrane proteins?
@Suvidu, I would counter that if the purification protocol is a pain, it's a valuable investment to be able to scaleup effectively.
Apr
3
comment How prevalent is Taq polymerase in adding 3' A overhangs to the PCR product?
From what I understand, the A' overhang does eventually fall off. However, TA cloning is a much easier route if you have a TA vector.
Apr
1
comment 205 nm UV-Vis readings
@MattDMo, I didn't want to lead the question but I was looking over this paper. There is a scientific basis for the quetion. onlinelibrary.wiley.com/doi/10.1002/pro.2253/abstract
Mar
29
comment DNA gel extraction: chemical contaminants
Have you tried using alternative DNA measurement methods like a Qubit?
Mar
21
comment What is a simple protocol for staining cells in suspension?
Are we talking about mammalian cells or bacteria?
Feb
14
comment Resuspending Cells from a filter plate
@Mattdmo, these are suspension cells so trypsinization will kill them. I'm using a vacuum manifold. I'm fearing the same thing which is why I'm doing this experiment to see if I can complete th mass balance
Feb
12
comment Finding proteins in DNA sequence
Aren't the RBS and Shine Delgarno sequences a much better search term?
Feb
8
comment Does an allergic reaction kill body cells?
I would imagine that the complement system may trigger cell death.
Jan
22
comment Is DNA green viewer carcinogenic?
How do you image the dye? SYBR and EtBr use difference wavelengths.
Jan
12
comment What is the extent of the effect of Tris on E. coli?
Thanks! I had the same conclusions in regard to the dilution factor so I wasn't too worried. However, it's always better to have a good idea of the mechanism.
Dec
16
comment Proteins that are strongly overproduced in E. coli and S. cerevisiae?
@Leonardo, CMV in ecoli probably would be a bad idea ;). I've heard that typically 1/6 of the cell weight would be protein so 20% doesn't sound too crazy.
Dec
10
comment Can compounds be predicted from Polyketide synthases gene clusters?
@Gergana Vandova, we were talking about whether or not Warp Drive Bio and Radiant have a realistic pipedream or not. I think that if they focus on PKS type Is, they might pull it off.
Dec
5
comment When running a gel, what could cause a standard to run “faster” than usual?
Are you sure you have complete digest of the vector?
Nov
28
comment Low temperature PCR
If there was an easy solution, I wouldn't be asking it on SE.
Nov
28
comment What is a good list of unsolved protein structures?
@leonardo, well that seems to be a challenge.