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Oct
24
accepted How can I predict DNA binding affinities from a protein sequence?
Oct
24
accepted phylogenetic analysis of gene enrichment?
Oct
24
accepted What is the relative power of GWAS studies in different species?
Oct
24
accepted Examples of intracellular parasites of medical or economic importance?
Oct
24
accepted number of RNA pol II molecules in a given human nucleus?
Oct
24
accepted DNA modifications other than 5-mC/5-hmC/5-fC/5-caC in vertebrate genomes?
Oct
24
accepted harvesting fertilized eggs from Tetraodontidae species?
Oct
24
accepted How can I normalize mRNA samples for sequencing?
Oct
24
accepted Modularity of transcription factors
Oct
24
accepted protocol for pulldown of DNA breakpoints?
Oct
24
accepted What is the difference between naive and adjusted p-values in a GWAS study?
Oct
6
asked Open Source Variant Caller comparable to GATK Haplotype Caller?
Oct
4
comment programmatic fast search of 100-1000 short reads to a public server and obtain list of nearby genes
I am reading SSAHA documentation and it seems to be able to do client/server.
Oct
4
comment programmatic fast search of 100-1000 short reads to a public server and obtain list of nearby genes
I am doing alignment of ~1000 different reads of 50-250nt each, not "1000bp reads"
Oct
4
comment programmatic fast search of 100-1000 short reads to a public server and obtain list of nearby genes
If I am going to run this locally, which of the aligners will let me run the system as a client/server? I wouldn't want the aligner to take 5 minutes to load the reference in memory and 5 seconds to align my 1000 reads...
Oct
3
asked programmatic fast search of 100-1000 short reads to a public server and obtain list of nearby genes
Sep
14
awarded  Tumbleweed
Sep
7
asked Switch gut microbiota due to diet and effect on calorie uptake
Jul
12
awarded  Nice Question
Jul
2
awarded  Curious