Greg Slodkowicz

647 reputation

211

bio	website	n/a
	location	Copenhagen, Denmark
	age	26
visits	member for	1 year, 5 months
	seen	Apr 9 at 8:37
stats	profile views	15

	647 reputation	bio	website	n/a	visits	member for	1 year, 5 months
211 badges		location	Copenhagen, Denmark		seen	Apr 9 at 8:37

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Dec 14	awarded	Yearling
Nov 19	asked	Nucleotide frequencies in Kimura's two-parameter model
Jun 11	answered	Introductory literature for synthetic / systems biology?
May 28	awarded	Enlightened
May 28	awarded	Nice Answer
May 6	awarded	Nice Answer
Feb 27	awarded	Benefactor
Feb 27	comment	What is the tRNA gene copy variation between different yeast strains? I don't think the coverage is deep enough (1-4x) for de novo assembly but I'll try running tRNAscan-SE on the unassembled reads and maybe try to see if there's a difference in coverage of some tRNA genes which would suggest that duplicated genes have been mapped on the same locus.
Feb 24	awarded	Nice Question
Feb 24	awarded	Editor
Feb 24	revised	What is the tRNA gene copy variation between different yeast strains? added 16 characters in body
Feb 24	comment	What is the tRNA gene copy variation between different yeast strains? I don't think this will work since it's NGS data assembled against a reference genome. In fact I ran tRNAscan-SE and all strains have exactly the same tRNA GCN as the reference strains but this is a consequence of the assembly process.
Feb 20	awarded	Promoter
Feb 17	comment	What is the tRNA gene copy variation between different yeast strains? The data I have is for over forty Sc strains so it wouldn't be possible to do those experiments within my timeframe/budget. I'm limited to computational approaches and my best guess was that some copy number variation detection algorithm could be applied to the raw read data.
Feb 8	awarded	Student
Feb 8	asked	What is the tRNA gene copy variation between different yeast strains?
Jan 18	awarded	Nice Answer
Jan 1	awarded	Critic
Jan 1	comment	Why do we age? or Do we have a theory of senescence? Actually, you want them to stick around long enough to take care of their offspring.
Dec 30	answered	What is the most difficult feature to explain evolutionarily?