I recently came across this question in the MIT Open Learning Library Pre-7.01 Biology Course. It is question 2d in Problem Set 1 (archived link).
The question, as well as the correct answers and explanation from the answer key, is shown below:
The following is adenine base, which can covalently bond, through condensation reaction with ribose sugar to form a nucleotide (ATP).
Which carbon atom of the ribose sugar would covalently bond with the circled region of adenine to form Adenosine triphoshphate (ATP)?
🅐 C1' ← correct answer
Ⓑ C2'
Ⓒ C3'
Ⓓ C4'
Ⓔ C5'Would you classify this base as purine or pyrimidine?
🅐 purine ← correct answer
Ⓑ pyrimidineExplanation:
Bases bond to the 1' carbon (C1') in the formation of nucleotides. Other key carbons are the C5', which binds to the phosphate groups, and C3', where new bases are added in nucleic acid synthesis.
Purines have two rings, a hexagon and pentagon, while pyrimidines have only one (hexagonal) ring.
The question, answer, and explanation are confusing to me:
- It looks like the molecule shown in the picture (labeled adenine) is actually guanine. Is this a mistake in the question?
- I know that a nucleotide is formed when adenine bonds to (deoxy)ribose which bonds to a phosphate group, but the question says that adenine covalently bonds with ribose to form adenosine triphosphate, which it calls a nucleotide.
- Is ATP a nucleotide?
- Ribose ($\text{C}_5\text{H}_{10}\text{O}_5$) and adenine ($\text{C}_5\text{H}_{5}\text{N}_5$)—or ribose and guanine ($\text{C}_5\text{H}_{5}\text{N}_5\text{O}$)—do not contain any phosphorus atoms, so it doesn't make sense that they would be able to bond to form ATP ($\text{C}_{10}\text{H}_{16}\text{N}_5\text{O}_{13}\mathbf{\text{P}_3}$). Furthermore, the reactions would not balanced in either case without using multiple molecules. Am I missing something?
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