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I have the pdb file of H-ras protein 5P21.pdb. I am supposed to compare the output of DSSP and STRIDE files after feeding this pdb file to respective servers. My question is how to make a quick comparison between these two results?

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Here a solution that does not require you to upload the files to the servers: You can graphically visualize DSSP and Stride at the Sequence Page at RCSB PDB:

http://www.rcsb.org/pdb/explore/remediatedSequence.do?structureId=5P21&bionumber=1

"add annotation" -> Stride and look at the graphical comparison between DSSP and Stride.

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