I have a list of genes for each of which I'd like to find:
A list of transcription factors that up-regulate the gene
A list of inhibitory factors that down-regulate it.
I used this tool on Qiagen's website to find transcription factors (and will be thrilled if someone can share a better tool). Its less than ideal for my purposes because I need to search each gene individually and there doesn't seem to be anyway of downloading or copy/pasting the transcription factors it returns; but it works.
What I really need now though, is a way to find inhibitory factors by gene. Does anyone know how I can do this?
I have already tried using wikipathways and found it to show almost none of the transcription factors I found on Qiagen's website leading me to conclude that their data is far from comprehensive. I have applied for access to Ingenuity only to discover that I will not be granted access soon enough to make use of it.