I'm a high school student whose interested in bioinformatics. Therefore I chose a project which I study Sequence Assembly. My main goal is to compare different paradigms (Greedy, OLC, De Bruijn).
I have done my initial research but I don't know which assembler to use for comparing paradigms. Most of them are designed for real world usage, where there are many different factors to consider, but in my case the problem is more like a Computer Science problem: Reconstructing an array of symbols from it's fragments.
If there is no hope, I will try to implement them myself but I want to avoid that since it will very likely to be error-prone and slower than real world implementations.