11
$\begingroup$

Natural transformation AKA natural competence involves the uptake of DNA into a competent bacterium (for horizontal gene transfer or as a food source). My question is about where this extracellular DNA can come from. Typically this "free" DNA originates from lysed bacterial cells. Are there instances where DNA is released without lysis that other bacteria can uptake via natural transformation?

Note: I am not interested in bacterial conjugation because I'm specifically interested in extracellular DNA that can be internalised by competent bacteria.

$\endgroup$
5
+50
$\begingroup$

Natural Transformation

The process of Natural Transformation (Lorenz and Wackernagel 1994) has a very huge importance in evolution of prokaryotes. Definition quoting from (Stewart and Carlson 1986)

Natural transformation is part of the normal physiology of the cell. It is the only form of bacterial genetic exchange whose functions are encoded on the chromosome, and competence is a heritable trait, subject to selective pressure.

This is almost similar to our daily use artificial transformation. You need some chemical like $CaCl_2$ to cell permiabalized, some chelating agents like EDTA and DNA material. You can imagine naturally occurring cell encountering such conditions, like decrease in temperature in presence of certain chemicals and proteins.

This concept of one cell externalising, and another internalising DNA got stronger when researchers observed free DNA in culture media (Catlin 1959, Sinha and Iyer 1971).

The Creation of eDNA

The release of eDNA (extracellular DNA) can occur via spontaneous excretion or autolytic action.

There are known mechanisms for the release eDNA like formation of blebs (Dorward and Garon 1990). This extracellular DNA production is affected by many physiochemical factors than biotic (Paul and David 1989). There are many in detailed reports which shows such DNA can be passed through cell wall without any cell damage (Hara and Ueda 1981). Half life of such eDNA in various environment is reported in following table from (Lorenz and Wackernagel 1994)

enter image description here

Now there are even more novel ways of production of extracellular DNA like in Neisseria gonorrhoeae secretion of chromosomal DNA occure via new type IV secretion system (Hamilton et al 2005). Not just experiments, mathematical models also shows novel role of such process in gene-level selection (Draghi and Turner 2006). I haven't touched upon uptake of these DNA, which itself has lot of literature and unique mechanisms like this.

$\endgroup$
  • $\begingroup$ This is exactly what I was looking for. Could I also add that in the 2004 Chen & Dubnau review, they discuss H.pylori having a mechanism related to the type IV secretion system for exporting macromolecules such as DNA. $\endgroup$ – James Nov 16 '15 at 3:58
  • $\begingroup$ Indeed. That (Lorenz and Wackernagel 1994) paper is very nice. You will get all sorts of references from that. Surprisingly, I hardly found any recent papers on this (after 2000). Is terminology changed or something ? $\endgroup$ – Dexter Nov 16 '15 at 4:41
  • $\begingroup$ When I first "read" the Lorenz & Wackernagel paper (it's a chunky paper!) I thought it was mostly discussing the uptake machinery which is what I was interested in at the time. On a re-read it has an entire section on excretion! As for recent papers, there is the 2010 Burton & Dubnau review that rounds up a lot of the more recent studies. Particularly I noticed the FtsK/SpoIIIE proteins. These are pretty different systems to anything I'm studying though. $\endgroup$ – James Nov 16 '15 at 5:01
3
$\begingroup$

Good question, the only thing I can add is that in biofilms, although the DNA is released via lysis, the lysis is controlled using quorum sensing and effects specific subpopulations (Okshevsky & Meyer, 2013).

$\endgroup$
  • $\begingroup$ That is bizarre! Very interesting, but unfortunately doesn't help answer my question. There may be some information in the paper but unfortunately it's behind a paywall! $\endgroup$ – James Nov 12 '15 at 4:44
  • 1
    $\begingroup$ @GoodGravy You can find a copy of the paper here. $\endgroup$ – Chris Nov 12 '15 at 11:25

protected by Chris Mar 24 '16 at 6:03

Thank you for your interest in this question. Because it has attracted low-quality or spam answers that had to be removed, posting an answer now requires 10 reputation on this site (the association bonus does not count).

Would you like to answer one of these unanswered questions instead?

Not the answer you're looking for? Browse other questions tagged or ask your own question.