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I am looking for a method to cluster single nucleotide polymorphisms based on clinicopathologic data (mainly receptor immunoistochemistry). So far, I've came up with only two that handle dummy variables as long as I want to examine minor allele presence or absence;

  • Principal Component Analysis
  • A priori (association rules)

Do you know of any papers supporting the abovementioned methods, or maybe suggest an alternative one?

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