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We do a research on a particular cancer (for e.g. breast cancer). Now, we have a result for the gene variation detection (VCF file). What next steps do we need to do? We don't have a clear picture about this. Can you give us some directions or few papers as an example? (of course it is a huge number but just mention a few). Thanks!

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closed as too broad by rg255, AliceD, March Ho, MattDMo, James Apr 20 '16 at 1:54

Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer. Avoid asking multiple distinct questions at once. See the How to Ask page for help clarifying this question. If this question can be reworded to fit the rules in the help center, please edit the question.