I did a multiple sequence alignment using Clustal omega. checked similarity for 3 protein sequences : aspartyl aminopeptidase [Homo sapiens], aminopeptidase P (APP) [Plasmodium falciparum 3D7], yeast aminopeptidase (S000001586)APE1. I got Percent identity matrix as
Percent Identity Matrix - created by Clustal2.1
1: PF3D7_1454400 100.00 16.18 20.35 2: gi|5902181|gb|AAD01211.2| 16.18 100.00 29.66 3: S000001586 20.35 29.66 100.00
- I would like to know how to interpret this matrix result
- Coming back to sequence alignments results, when I click on 'Show colors', the alignment summary is colored in 4 colors - red, green, blue and pink. Can anyone help me in decoding the color reference of alignment summary?