0
$\begingroup$

I have a dataset that I extracted using Cytoscape and STRINGAPI Hoz can I retreive the annotation of that network from uniprot as it has more than 1k proteins . and doing it manually is not possible

$\endgroup$
  • $\begingroup$ Do you want anything specific from the annotation? $\endgroup$ – James May 22 '17 at 10:08
  • $\begingroup$ not really but it should contain the name the associated id , function maybe ... $\endgroup$ – A M May 22 '17 at 15:19
1
$\begingroup$

You can upload your list of accession numbers to the batch retrieval service for the UniProt Konwledgebase, http://www.uniprot.org/uploadlists

A video tutorial for this service is available at https://www.youtube.com/watch?v=kLdgjqWoMZc

Once you have retrieved your proteins, you can click on "Columns" to customize your output and add columns, e.g. for function annotation. See also http://www.uniprot.org/help/customize or http://insideuniprot.blogspot.ch/2015_03_01_archive.html Results can then be downloaded in tab-separated format.

If you have any additional questions, please don't hesitate to contact the UniProt helpdesk.

$\endgroup$

Your Answer

By clicking “Post Your Answer”, you agree to our terms of service, privacy policy and cookie policy

Not the answer you're looking for? Browse other questions tagged or ask your own question.