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I need 16S rRNA and 5S rRNA (Gammaproteobacteria - E.coli) Secondary structure files in ct format.

I tried looking for them in different RNA databases, could not find one. Can someone tell me where to find such datasets?

Thanks in advance.

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  • $\begingroup$ This site has secondary structure maps for rRNA from different organisms but they are just pictures. Not sure if it is helpful. $\endgroup$
    – WYSIWYG
    Apr 5, 2019 at 12:18
  • $\begingroup$ Thanks. But I was looking for the secondary structure files in ct format. I found it in RNA STRAND v2.0, please check the answer below. $\endgroup$
    – User
    Apr 5, 2019 at 13:24

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RNA STRAND v2.0 - The RNA secondary STRucture and statistical ANalysis Database http://www.rnasoft.ca/strand/

16S rRNA: secondary structure file in ct format

http://www.rnasoft.ca/strand/show_file.php?format=CT&molecule_ID=CRW_00111&check_out_the=View+the+RNA+sequence+and+secondary+structure+for+molecule+CRW_00111

5S rRNA: secondary structure file in ct format

http://www.rnasoft.ca/strand/show_file.php?format=CT&molecule_ID=CRW_00573&check_out_the=View+the+RNA+sequence+and+secondary+structure+for+molecule+CRW_00573

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