I would like to perform redundancy reduction for my test set for membrane topology prediction. I checked the 1998 paper and website of the HMMTOP server but haven't found any download links for the dataset that they have used for training.
In the Appendix Section of the paper, there is a table of entries and topologies. Below, there is a note:
*Entries which are included in the initial parameter and pseudocount settings from the 83TMP set.
Please correct me if I'm wrong, I suppose these those 63 protein entry names with an asterisk are the data used for training?