I would like to know how can i run a network analysis for identifying major OTUs hubs. I wish to build a network of co-occurring OTUs found in different soils samples.
I've started going through the VEGAN R package but i'm not sure it's what i'm looking for. any recommendations network analysis packages ? thank you!

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    $\begingroup$ Can you better define "major OTU hubs"? Are you attempting to build a network of co-occurring OTUs and observe groupings? Please revise your question. $\endgroup$ – Dirigible Feb 6 at 19:04
  • $\begingroup$ can you tell us what your starting data look like? raw reads? count tables? $\endgroup$ – Maximilian Press Feb 14 at 4:47

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