Questions tagged [gene]

The basic unit of heredity which encodes for some function RNA or protein product.

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4
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2answers
117 views

What is the difference between non-coding and intergenic regions?

The initial question was about understanding what is in the downstream of a gene in a eukaryotic organism. I understand that this region is located 3' of a gene, and therefore I would expect to find ...
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1answer
78 views

Deviation from Hardy Weinberg equilibrium (HWE)

I have a set of 10 genes, each gene contains around 15 SNPs. I have tested the deviation from Hardy Weinberg equilibrium (HWE) for all SNPs. All of the SNPs didn't deviate from HWE, except 5 SNPs in ...
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1answer
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Is there a term for the opposite of intergenic?

I am looking for a term that describes DNA regions that overlap genes, i.e., non-intergenic DNA regions. For example, say I am writing a paper about DNA-binding sites (i.e., DNA sequences that ...
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1answer
58 views

Should I consider one or two DNA chains to find how many nucleotides are in a gene?

I am trying to solve an exercise. How many nucleotides does a gene contain if information about 287 amino acids is encoded in it? What is the molecular mass and length of this gene? AFAIK, I have to ...
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1answer
61 views

What is the impact of selection on orthologous and paralogous genes? How would this impact differ in different regions of protein coding genes?

Since paralogs increase the size of the genome and provide more opportunity for the evolution of novel characteristics, would they be more prone to selection?
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1answer
45 views

What is the definition of gene, genotype and phenotype, pre and post DNA?

i know that the definition of gene is a unit of heredity, also a sequence of nucleotides in DNA that gets copied to RNA and then proteins. Genotype is the genetic composition of an individual ...
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25 views

Microarray experiment validation meaning

I have a quick question: what does microarray experiment validation mean ? I was reading a paper in which they say that the data of the experiment show that the 3 genes radB, dp1 and dp2 are co-...
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38 views

Is the mRNA produced constant during time?

I am doing a statistical data analysis of a dataset of P. Furiosus cells exposed to gamma radiation. For the samples exposed to gamma radiation, I have the values of mRNA produced over time. For the ...
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1answer
53 views

Is there a negative correlation between the mRNA produced by the cell and the time of extraction? [closed]

I am doing some data analysis about gene expression time series. When I plot mRNA produced by P. Furiosus cells irradiated by gamma radiation against the time of extraction, it seems that there is a ...
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1answer
48 views

Convert fasta to ascii?

Is there an algorithm or tool to convert a fasta sequence file (such as the file linked below) into an ascii file for the purpose of gene synthesis? https://www.rcsb.org/fasta/entry/6EQJ To the best ...
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1answer
35 views

What is the word for a group of genes inherited together?

I know the words haplotype and haplogroup, as well as genetic linkage, but... I recently came across a new phrase describing genes which tend to be inherited as a group, and wrote it down, but now ...
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1answer
43 views

Gene knockdown vs gene knockout vs knocksideways? [closed]

How are the techniques: Knock-sideways, knockout & knock-down different?
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19 views

identificaation of the correct fragments with desired nucleotide sequences using probes

in making of rDNA, my text book has a point that is written above(the question). what i don't get is if we already know what the nucleotide sequence is why do we need to take out the gene having the ...
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2answers
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Clarification regarding a statement in “The Selfish Gene” by Richard Dawkins

In the third chapter of The Selfish Gene: Immortal coils, Dr.Dawkins makes the following statement while arguing for the case that ultimately "the gene" as he defines it is the unit of natural ...
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22 views

How does DNA shape a living organism? [closed]

I'm haven't studied biology so excuse me if I'm getting something wrong. I'm trying to understand how the DNA from a sperm and egg cause the egg too multiply and form a perticular shape (shape of a ...
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1answer
30 views

Mutated and unmutated PCR product

If I have a mutated colony containing the fusion protein, mCherry instead of the stop codon TAA, and an unmutated colony which does not contain the protein. Why will the PCR products of the two ...
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2answers
29 views

which specific field to study to know more about genes and genomes [closed]

I recently got interested in specific subjects : 1.Evolution 2. DNA, genomes etc and its structure 3. Abiogenesis I am a software engineer with good fundamental understanding in math & physics ...
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1answer
27 views

Where do biologists get information about mouse genes? [closed]

From this article https://ui.adsabs.harvard.edu/abs/2005Sci...308.1909S/abstract “We created transgenic mice that overexpress human catalase localized in the peroxisome, nucleus, or mitochondria (...
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1answer
71 views

Can a gene be split between different genomic locations several kb appart?

Can you have exons and introns of the same gene separated by hundred of kb in a genome? If so, how is the full mRNA assembled in such distance? I'm working on plant mitochondria and I've seen an ...
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1answer
266 views

Open Reading Frames vs Coding Sequences (CDS), are they different?

The two terms confuse me for a long time. What is the difference between ORF and CDS. Some people say ORF could contain intron and CDS does not. The wikipedia definition of ORF does not contains ...
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1answer
77 views

How does new species come into existence?

The only reason for the creation of new species that I found from the internet is geographical isolation. Are there any more reasons?
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25 views

How do I identify and then isolate a Gene that codes for a particular observable phenotype

How do I identify and then isolate a Gene that codes for a particular observable phenotype. It is a novel bacteria and I do not know the gene sequence or the protein that it codes for.
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1answer
76 views

What are the implications/predictions of the selfish gene theory?

Are there any testable predictions or implications of the selfish gene theory? Or it is just interesting interpretation of the observations/experimental data? If this theory is not falsifiable and ...
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Genes where both a disabling mutation and copy number amplification cause different genetic diseases

I'm trying to make a list of such genes, because they must be tightly regulated. MeCP2 is one - it causes Rett Syndrome with a disabling mutation, but causes MeCP2 duplication syndrome if its copy ...
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1answer
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What is an allele?

According to the entry for allele in Wikipedia: “An allele is a variant form of a given gene, meaning it is one of two or more versions of a known mutation at the same place on a chromosome.” ...
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2answers
153 views

What does it mean that the transcript is enriched?

I think I don't get the meaning of "enriched" in the context of genes. What's the difference of gene being "enriched" and "expressed" in the cell?
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Can two proteins activate/inhibit the same gene at the same time?

Suppose there are two proteins inhibiting a particular gene. Its not necessary that both will inhibit the gene at the same time instance right? So if one protein has already inhibited that gene before ...
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31 views

Study on Introns?

I am curious whether there has been a study done on the effects of removing introns. Specifically, what happens if you genetically edit a eukaryote genome to no longer contain introns? Or maybe just a ...
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2answers
2k views

Identify which of the two columns A and B represent gene and chromosome

I am a bit confused on this question in my Textbook (STD 12) and have got all sorts of answers on searching it but I am still not able to comprehend it literally. Can someone answer this and explain ...
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1answer
89 views

Are any genes over a billion years old?

Are there any genes (for any organism) for which we can say with confidence that they are over a billion years old?
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4answers
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Do all humans have an identical nucleotide sequence for certain proteins, e.g haemoglobin?

All humans have the same sort of proteins in our bodies. Take haemoglobin for example. Is the gene coding for haemoglobin in my body identical to everyone else's gene or is there slight variations ...
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1answer
31 views

Consider gene is countable, can anyone give a concrete example of “a gene”?

gene is a countable noun but people always say genes, so what is A gene? for instance, Each chromosome contains many genes, so, which part of the chromosome of Escherichia coli could be ...
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1answer
41 views

Do human genes get affected by irregular sleep and other factors

I'm new here so please go easy on me. Do our genes-the ones that carry our appearance, intelligence and other traits get destroyed or lost due to irregular sleep, excessive body heat, smoking, ...
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1answer
61 views

Where can I find DNA decryption research? [closed]

What is the name of the science that studies the mathematics of DNA? Where can I learn about maths, statistics, types of code, numbers, patterns and graphs for genes and information found in DNA?
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1answer
73 views

Emergence of novel protein interactions by mutation of amino acids

Are there any examples of proteins that, without coming from a recent duplication event, underwent a mutation(s) that caused it to have a novel interaction with a new ligand, substrate, other protein ...
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1answer
114 views

Why eyebrow growth stopped after it has specific length?

When comparing with hair that grow forever after we cut it, why eyebrow not. what gene measure current length of eyebrow so it stop to grow after specific length.
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1answer
68 views

What is the difference between Regulatory Gene and Modifier Gene?

If both controls the expression of another gene by physically or genetically interacting with the target gene, which attributes make "Regulatory gene" different from "Modifier gene" or vice-versa?
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Is there a known mutation of an insertion type that prevents being infected by a virus?

Recently there was big news about the mutation CCR5 delta 32, that prevents HIV from infecting white blood cells, that was a deletion type of a mutation. Do we know of an insertion type of mutation ...
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Does the law of independent assortment apply to homologous chromosomes or alleles, or both?

My textbook is giving me two definitions 1st def: "random orientation of homologous chromosomes at the metaphase plate in meiosis 1." 2nd def: "alleles for one gene separate into gametes ...
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1answer
42 views

What does Ercc1-/- / DAT-Cre+ mean?

I really need to know what Ercc1-/- / DAT-Cre+ mean. I think the 1st part means that the mice don't have the Ercc1 gene (knockout). But what about DAT-Cre+? This question arised from reading the ...
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1answer
55 views

How can inbreeding be used for selecting mutations?

I understand that inbreeding, after a number of generations of crossing genetically related individuals eventually yields homozygotes, however I can't seem to understand how it can be used for ...
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1answer
41 views

Identifying statistically significant gene rich and gene poor regions

I am just wondering If there any adapted way of Identifying significant gene rich and gene poor regions in each chromosome for a given genome say mm10?
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2answers
118 views

If bacteria with recombinant DNA molecules do not survive in gene cloning, how they can be grown into a colony after being isolated?

This is as far as my understanding of gene cloning goes. Let's say that the plasimd (vector) in the bacteria contains an ampicillin resistence gene. Through restriction enzymes, the ampicillin ...
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1answer
45 views

Gene frequency — database/site

Is there any free database when one can check the gene frequency in a healthy population? For example I would like to check it for genes like BIN1, CLU or CR1. On the English Wikipedia I found a gene ...
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Can Tajima's D and other population genetic tools be used to copare Arabidopsis ecotypes?

I am currently investigating 2 genes in Arabidopsis taliana that are a product of a recent duplication even (observable from synteny and phylogenetic analysis). In addition to the molecular and ...
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1answer
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Are modern gene-editing techniques capable of creating genetically-superior versions of humans? [closed]

Can we alter the DNA in, say, a small-framed, low muscle mass male to those of elite bodybuilders? Can we alter the DNA sequence that stops balding and hair loss? How about the genes responsible for ...
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1answer
21 views

Question: What is CINWntUp and CINnormL?

What is CINWntUp and CINnormL? I read a paper that uses this two things as classes but Im not sure what they represent. I imply that CIN is referring to Chromosomal instability but I don't know what ...
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1answer
549 views

Are androgenic-anabolic steroids a form of gene editing?

Is taking AAS a form of gene-editing? Steroids alter genes in some way since they allow people to build more muscle than what's naturally possible -- so they sort of "break" natural genetics somehow. ...
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1answer
28 views

Gene expression: which allele is considered?

For human beings, we have two copies of each gene inherited from the parents. The question is, when referring to gene expression, which copy (or allele) is considered?
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1answer
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Confusion about a gene's description

I have a very basic biology question. I am reading the description of gene FAM166A here, and I have no idea what "sequence similarity 166" means. What does 166 stand for, what is this gene's sequence "...