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Questions tagged [genetics]

Genetics is the branch of biology that deals with the transmission and variation of inherited characteristics.

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How to estimate heritability from breeding data

I have a lot of plant-breeding data (tens of thousands of results) that are composed of phenotypes of parents and offspring. The plants however went trough years of selection and it is not balanced. ...
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How frequent are selective sweeps?

Introduction Selective sweep is the most famous genetic signature of selection. We know of a number of classical examples of selective sweeps, some of them in humans. See the classical example of the ...
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Y Chromosome in Ovary Cancer Data

I have been analyzing TCGA Ovary Cancer data. In Somatic Mutation data, there is data of mutations in all the chromosomes (1-22 and X), but amazingly, I have found one (just one) row of Y Chromosome ...
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At what rate do chromosomal rearrangements occur?

How often do chromosomal rearrangements occur? I am interested about these kind of chromosomal rearrangements that are passed on to the descendants, i.e. germ line chromosomal rearrangements. The ...
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effect of background selection on promoter regions compared to distant enhancers?

Has anyone looked at the effect of background selection on the levels of conservation of promoter regions compared to distant enhancers? Do promoter regions have a higher conservation due to ...
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How can a child be blood type AB, if both of the parents are blood type A?

Basically, both of my parents are blood type A (both are confirmed and it's also certain both of them are my biological parents). I recently found out my blood type is AB. How is this possible? I ...
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How does the new discovery that mitochondrial dna is inherited from both parents change population genetics and other dates?

This new study seem to have pretty much proven that mtDNA is inherited from both parents. I assume that this would lead to most age estimates of ancient human ...
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Isn't heritability more important to genic capture than just genetic variance?

Rowe & Houle (1996) give two criteria for the selection of costly female choice: Condition dependence of sexually selected traits High genetic variance in condition Regarding heritability, ...
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Is Phenylalanine hydroxylase gene biallelic?

Since the PAH gene is biallelic, and there are many disease causing mutations, most PKU patients are compound heterozygotes. (paper) Compound heterozygosity in medical genetics is the condition ...
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Are epicanthic folds a dominant trait?

My state (Tripura) originally had a mostly mongoloid-feature-possessing population (ethnic group: Tripuri). Recently a large number of non-mongoloid people (ethnic group: Bengali) have migrated to ...
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Eye color genetics

I am trying to find a model to link the phenotype eye color to its genotypes. I know that there exists a simple model from Davenport, which explains {brown,blue} eyes. Further, there is an extended ...
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Regulation of LBD33 genes Arabidopsis. If LBD 33 gene is up-regulated by auxin then why does expression decrease when increasing auxin concentration?

I have a question regarding the regulation of lateral boundary domain genes in Arabidopsis (specifically LBD33). I am an undergraduate student trying to understand the results of a lab where I measure ...
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Could we breed a dog to the size of a thumb?

We've gotten from a wolf to a small breed such as a chihuahua. So the question is: can we go even further and have a dog as small as a thumb (adult dog)? If not, what are the factors that limit the ...
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Offspring of parents with different number of chromosomes

Many papers report that dog-whelks (Nucella lapillus) show a distinct chromosomal polymorphism between populations of 2n = 24 up to 2n = 36. Could somebody please tell me how many chromosomes the F1 ...
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Relationship between inbreeding and sterility in humans

In general, inbred individuals tend to be at increased risk of sterility as shown in cows (Gonzales-Recio, 2007) or in leghorns (Nordskog and Cheng, 1988) for examples. I only have very quickly looked ...
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Measuring gene similarity in two bacteria models

I'm currently working with some computational models of bacteria. The bacterium I am considering is an Ecoli K-12 which has 139 genes. I have several models of the same bacterium with different ...
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Why are animal mitochondrial genomes so conserved and small in comparison to those of plants?

Background Levings and Brown (1989): Higher plant mitochondrial genomes are much larger and more complex than those of other organisms. They vary in size from about 200 kb in Brassica species ...
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Number of hair cycles in humans

I've seen several websites claim the amount of hair cycles a follicle will go through is predetermined at around 25-30 complete cycles. Is there any genetic evidence to validate this claim? How can ...
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How to determine if twins are identical or fraternal if only one is alive?

I had a twin brother who died at birth. I've missed him all my life, and have been curious to know if we were identical or fraternal. Is there a test to determine whether we were identical or ...
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Can a regulator genes be more highly expressed when it has more places to bind?

I am doing some research on small cell lung cancer and, from what I have found, many tumors show high levels of ASCL1, which is a regulator for neuroendocrine cell differentiation. However, no papers ...
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Majority rule definition

In this book, they talk about the majority rule. Majority rule, which retain s the edges present in more than 50% of the trees. They used that rule also in ...
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How would circular dominance of alleles be determined on the genetic level?

The distinction between dominant and recessive alleles seems to be due to loss or gain of function in the proteins they code for. Alleles have been observed exhibiting incomplete and hierarchical ...
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Does Pre replication complex sit on both strands?

In case of prokaryotes, the ori site have a definite nucleotide sequence. Each ori site have 5 9base-pair consensus sequences and 4 non-consensus sequences. DNAa binds to both types of sequences with ...
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psbA-trnH intergeneteic spacer inversion

What kind of software tool would you recommend as best suited to detect psbA-trnH inverisons? I have 1x coverage Sanger .fasta files and >2000 sequences, with 1 sequence per species. Most tools I have ...
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Question about genetic recombination

I am having some difficulty understanding a few things about genetic recombination, in part because of confusion from different diagrams in books. First of all, I wanted to verify whether I have ...
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Why might the chirality of gastopods be dominantly dextral?

This wikipedia page on gastropods provides a definition of chirality, and briefly describes the genetic mechanisms behind why a shell is wound left (sinistral) or right (dextral) handed. It also ...
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How do genes get passed from one hive to another?

In hive species, like honeybees, how do genes propagate from one hive to another? If the queen only mates with drones from the same hive, and queens and drones are born to the hive they end up mating ...
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Could trees be engineered to produce rainfall-nucleators?

Scientists are using genetic engineering to make trees produce more terpenes. Is it possible to genetically engineer trees to produce more hygroscopic volatile organic compounds? These trees could be ...
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What is the effective population size of a simple two deme metapopulation?

I am confused as to how to compute the effective population size $N_e$ of a theoretical structured population. Let's consider here a simple case study. Imagine a 2-deme metapopulation. Each deme is ...
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Breeding Southern Right Whales Genetics

I don't know much about biology. I just like watching David Attenborough videos and this made me curious. I just watched this video about breeding Southern Right Whales, and these two quotes puzzled ...
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Is $F_{ST}$ a probability and a correlation coefficient?

$F_{ST}$ is one of the most famous and most important statistics of all of evolutionary biology. Yet, many people misunderstand it or misuse the classical results from the literature on $F_{ST}$ (...
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RAD sequencing: choosing the appropriate enzyme?

I’m studying Darwin’s finches genome and I say in some articles that the researchers used restriction enzymes to cut the DNA in their double digest RAD protocol. They are using EcoRI and MseI (GAATTC ...
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Fur genetics - what are the causes of fur colour decision?

This Australian Shepherd puppy's father is a black-tri; mother is a blue merle. What would cause this dog to have so much white color? Are there any general explanations as to why this might happen ...
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How do sex biased genes evolve?

I am wondering how do genes become sex-biased? that is, how does a gene evolve expression which is regulated in a sex-specific manner (assuming no effect from sex-limited Y/W chromosomes). I ...
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Do genetic modifications exist to enhance the taste of tomatoes?

GM tomatoes seem less tasty. Has there been any research on GMOs with regard to taste? Can scientists introduce a gene to, let's say, tomatoes, which would enhance the flavour? If not, why?
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Problem involving selfing (inbreeding it with itself) a plant to generate purebred lines

I am working on a past exam problem where the first bit is as follows A plant is repeatably selfed to generate inbred lines. Let $\mathbb{P}(He|He)$ denote the probability that a heterozygous ...
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Modified Mendelian Ratios Problem

I'm studying modified Mendelian ratios. I've got a theoretical problem that I'm stumped on: A species of bird may have normal wings, or a mutation that causes frazzled wings. I do 15 identical ...
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255 views

Gibson assembly using NeBuilder

I am supposed to construct a plasmid that contains features from two other plasmids. My strategy is to generate three fragments form the two other plasmids. I was encouraged to try Gibson assembly, ...
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What are polytene bands, and why are they there?

Drosophila polytene chromosomes have been particularly useful in genetic research, as it made cytogenetic gene mapping possible with very little effort. This was primarily accomplished due to polytene ...
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The afflictions of Tarrare

Are there any conjectured mechanisms that cause Tarrare's extremely oversized stomach and abdominal cavity? Along with his superhuman appetite of course. Whether from a medical perspective or a ...
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what is the difference between homozygous and heterozygous duplication?

In a genetic test result it's written homozygous duplication or heterozygous duplication Does it mean four copies of the ...
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What are the different types of SNPs?

When I search for this online I get answers such as substitutions, deletions, insertions etc. But I mean in the sense that I have been reading different terms infront of the word SNP such as: lead SNP,...
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Which enzyme is Nick Lane referring to?

In Life Ascending the author, Nick Lane, refers to an enzyme in his introduction: '' It concerns an enzyme (a protein that catalyses a chemical reaction) that is so central to life that it is found ...
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Does the male and female always split evenly the genetic material given to their offspring?

Are there animals known to have a different percentage of splitting of genetic material, like the male give 75% and the female just 25%. I know that drone bees have only genetic material from their ...
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Honeybee relatedness: workers and nephews

This is my first question on this site. If anyone could help me get to the bottom of it, I would be very grateful. I am currently working on a lecture on kinship in animals. It goes without saying, ...
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Is gut bacteria Succinivibrionaceae's low methanogenesis understood well enough for GM of cattle gut bacteria to be considered?

After watching the Periodic Table of Videos episode linked in this question I watched the episode Wallabies and Methane where Sir Poliakoff says (a bit after 02:00):...
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Could the Immune Gene HLA-B27 be gentically altered, snipped, switched off, replaced, edited within the body

Could the Immune Gene HLA-B27 be genetically altered, snipped, switched off, replaced, edited within the body.? Thousands upon thousands suffer immune disease as do I from this highly implicated gene....
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True examples of common variation due to Mendelian Inheritance

Classic examples of mendelian inheritance are genetic diseases such as sickle-cell anemia, Tay-Sachs, cystic fibrosis, and xeroderma pigmentosa. For some of these diseases, it is believed that they ...
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Estimating population divergence time with a single mitochondrial marker

Is it possible to estimate population divergence time with a single mitochondrial marker? Here is additional information for my specific case: Mitochondrial marker: Cytochrome Oxidase Subunit 1 (...
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How are animal patterns encoded in the dna?

After seeing the patterns on the feathers of a argusianus argus pheasant (shown below), I am curious where is the information that encodes a pattern for a particular bird, and what form is this ...