Questions tagged [literature]

Questions about scientific journal papers, books or other written sources, or for requests for references.

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11
votes
3answers
8k views

How much energy does a lion contain? [closed]

I was looking into the following problem: Obviously, the solution lies in how much energy either can output per unit of time. The total energy output of the sun is $3.8×10^{26} \frac{J}{s}$. The ...
0
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1answer
51 views

Chemical reactions at the synapse

For my course project, I am thinking of listing out major chemical reactions that occur at synapses, along with their temporal characteristics. I could not find any textbooks to use as a starting ...
2
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1answer
306 views

General time reversible model of evolution and Felsenstein model

I would like to get suggestions for the books related to General time reversible model of evolution and Felsenstein model etc. Specifically the mathematical treatment of these topics and concepts ...
1
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0answers
41 views

Gastroenteritis virus causing mutation of the Enterochromaffin cells

I am working on the solution to a worldwide problem: IBS or chronic diarrhea following a viral gastroenteritis infection. I think I have an answer. The only missing piece to the puzzle I found in a ...
2
votes
2answers
4k views

Nature Scientific Reports vs. BMC Genomics

I do not know if this question to suitable here or not. I posted it as I think biologists can help me in this question. If not suitable here, then I am sorry for that. I have written paper which I ...
3
votes
2answers
76 views

Is there any research on how accurately people can follow a beat?

I'm currently helping develop a rhythm game, and as part of the scoring system, I'd like to make scores and ranks based more on accurate pattern recognition rather than hitting notes very exactly on ...
5
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2answers
2k views

How can I text-mine full-text articles from PubMed? [closed]

I want to do a text mining study using full-text versions of articles I find on PubMed. My intended search protocol will be roughly as follows: Search PubMed using a gene name (and any alternate ...
3
votes
1answer
828 views

What is the best current understanding of how yeast transformation works?

I would like to get myself up to speed with what is currently known to science about yeast transformation. Specifically, transformation of plasmids and linear DNA fragments. I am particularly ...
7
votes
1answer
2k views

Alfred Jost's rabbit experiment: how did he actually do it?

I was watching a Crash Course on Biology YouTube video by Hank Green: Great Glands - Your Endocrine System. Hank humorously describes a sex determination experiment by Alfred Jost as follows (...
5
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1answer
426 views

What is a good identification key for European mushrooms?

I live in the Netherlands, and I am looking for an identification key for mushrooms. Are there any keys you could share?
7
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4answers
757 views

Books for biology,popular but rigorous? [closed]

There are very goods in physics and mathematics (like Feynman lectures for exemple) that give an elementry but but broad view of their,therefore I'd like for help to find help to find a biology book ...
4
votes
2answers
3k views

Where can I find a list of common enzyme cofactors and/or co-enzymes?

Where can I find a list of enzyme cofactors and/or co-enzymes, ordered by how common they are? For example, $O_2$, $H_2O$, $ATP$, $ADP$, $NAD$, should be ranked in the first places, because they ...
8
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1answer
427 views

Start studying mathematical biology from basics

I am really passionate about theoretical and quantitative biology and I would like to build my future career around this topic. I've just got my bachelor's degree in biology (ecology) but scince I've ...
2
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1answer
159 views

How long does it take for a cell to synthesize an enzyme?

Where can I find data regarding the times distinct cells take to synthesize distinct enzymes?
2
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1answer
8k views

List of Asymmetric Animals

The (male) Fiddler Crab is a famous example of an animal whose morphology exhibits neither mirror nor radial symmetry: (Image source) List of animals featuring external asymmetry is a Wikipedia ...
5
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0answers
165 views

Where can I get numerical data for the PAR (photosynthetically active radiation) curve?

I'm trying to do some rough figuring to calculating efficiencies of various light sources for growing plants. I'm hampered, however, by the lack of a curve to multiply by the spectrum of light ...
2
votes
2answers
110 views

Is there a name for this principle in biological contexts?

This is mostly a question about usage. There is a probability-related idea that has been used in at least two biological contexts. The idea is that if something happened, it was probably likely to ...
2
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1answer
64 views

Protein Conformation Modeling

I'm interested in learning about computational modeling in biophysics. I have heard some amount about people modeling proteins as a network of ideal springs to examine things like conformation ...
3
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0answers
53 views

phosphorous availability to mycorrhizae and parent plant, timing - paper search

I'm researching phosphorous uptake in monocots to develop planting mixes for riparian planting. I recently saw a paper suggesting (the author lacked proof) that root zone mycorrhizae may solubilize ...
5
votes
2answers
115 views

Is there a standard reference for the importance of tumor heterogeneity?

In a recent post, Philip Gerlee highlighted the two biggest contributions of mathematical oncology to cancer research: (1) increasing focus on the progress of cancer as an evolutionary process, and (2)...
1
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1answer
209 views

Where can I find the metabolic network for the human erythrocyte?

Where can I find the metabolic network of the human erythrocyte (red blood cell), in SBML format? The red blood cell metabolic network is a model that's usually employed in the literature [see refs ...
0
votes
1answer
90 views

bioinformatics /genomics [closed]

i am looking for likely truncation sites to prove recombination in sequences. i have 4 sequences. i believe one to be the "real sequence" and the other 3 to be recombinants caused by cleavage possibly ...
7
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4answers
735 views

Modern immunology textbooks

I am looking for recommendations to good textbooks introducing modern immunology. Review articles, preferably modern (post 2000) would also be useful. Please, include a brief comment with each book ...
7
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1answer
1k views

Time spent in phases of cell cycle

I am looking for references to papers containing the time intervals spent in different phases of the cell cycle (ej., G0, G1, S, G2, M for eukaryotes) for different cells. In particular, I am ...
6
votes
2answers
416 views

Measuring fitness / lifetime reproductive success (LRS) in Drosophila

I am planning a fitness assay of Drosophila melanogaster. I'd like to get a good measure of lifetime reproductive success (lrs) but I don't want to count all the offspring produced over a lifetime by ...
5
votes
1answer
2k views

What is needed for a G-matrix?

I have been doing a lot of reading on quantitative genetics and the G- (and B-) matrix lately. I get the principle behind performing the analysis now but I am still not sure how to do it. I'd like to ...
9
votes
3answers
2k views

What are the benefits of elucidating the crystal structure of a protein?

I have spent months as a student working on trying to form a tricky protein crystal. But I have never actually had explained to me why the structure will be useful. Once elucidated, what can we ...
2
votes
1answer
346 views

What is the full name of E. G. Gray?

E. G. Gray is Neuro scientist who found and described first the two major morphologically defined synapse types (Gray Type I (asymmetric) and II (symmetric)) in his work E G Gray (Oct. 1959). “Axo-...
8
votes
2answers
178 views

Examples of references for mathematical approaches in bioinformatics that are applicable to linguistics?

Do you have any classic references for mathematical approaches in bioinformatics that are applicable to linguistics (or vice versa)? EDIT I am mainly interested in approaches to reconstruct the ...
4
votes
1answer
61 views

Is there a database of pollen-seed distances across plant species?

I was enjoying Richard Smith's excellent answer to this question, and wondered: If you consider the pollen/seed distribution range to be plant locomotion, is there a database that compares these ...
2
votes
2answers
1k views

Do primates other than humans have a consistent sleep schedule?

I'm doing some sleep research and would like to compare a human sleep pattern as recorded by a wrist-based actigraph with a "natural" sleep pattern, such as from apes. In an experiment like that, a ...
2
votes
2answers
1k views

A source for leaf architecture of different plant species/genus?

I'm currently working on extracting some features of the leaf architecture based on their images (like L:W ratio, laminar shape, ...). I use the Manual of Leaf Architecture as the reference. It is ...
1
vote
1answer
160 views

Single Nucleotide Polymorphisms and diseases

I am writing a report on how Single Nucleotide Polymorphisms occurring in each of these regions: Transcription factor (TF) binding sites Epigentic signals Splicing variants MicroRNA binding sites ...
3
votes
1answer
139 views

Keyword based literature search [closed]

I understand this is not a biological question but this is often a problem whenever I look for literature. How to look for a reference for some fact based on keywords. For instance you know about a ...
2
votes
2answers
343 views

Which texts are good for beginners to understand evolution on the genetic scope?

Are there good texts to study the evolution, how it works, and how mutations and changes lead to evolution of the organism ? And how does the information increase through the long time using ...
0
votes
2answers
158 views

Sewall Wright for dunces

[This is one more post in my growing "X for dummies/idiots/morons/etc." series.] I've been enjoying Provine's The origins of theoretical population genetics for the last couple of days, but I must ...
1
vote
2answers
269 views

Recent and good quality articles on systems biology [closed]

I'm a biotechnology student and I have to write a sort of non-experimental thesis (30 pages long) within the end of a three years study. I'm very interested in the "systems biology" field and I'm ...
2
votes
0answers
351 views

Size of classical liver lobule across species

A classical liver lobule is made up of a central vein and the portal triads. A typical human liver weighs around 3 lbs. , while a typical bovine liver weighs around 12 lbs. I was wondering if anyone ...
3
votes
1answer
835 views

What is range of the number of individual organelles in cells

What is the range of the number of individual organelles in a cell? I am not a biologist but I understand that there's one nucleus and sometimes lots of mitochondria, so I am after the total number. ...
3
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0answers
124 views

Microscopy Book Suggestions

I've learned programming through great book recommendations; many from the Stack Exchange series of sites. I'm hoping to take this approach in order to gain a fundamental understanding of how ...
3
votes
1answer
617 views

Is Webmedcentral a reputable scientific publisher?

I am a student, and I have written a paper (in drug discovery) which I want to publish. While searching for possible journals I came across Webmedcentral. Is Webmedcentral a reputable scientific ...
5
votes
3answers
594 views

Good book on Origin of Life [closed]

What is a book that goes into reasonable detail (but isn't textbook-level technical) about the origin of earth and in particular the origin of life on earth? Something intended for a broad audience, ...
5
votes
1answer
251 views

Modern reference for Kropotkin's lazy bees

I have been reading through Peter Kropotkin's Mutual Aid: A Factor of Evolution and he mentions a curious fact about bees (bolding by me for emphasis): predatory instincts and laziness continue to ...
3
votes
3answers
441 views

Looking for Kelly Chibale's paper on Malaria cure

From National Geographic, there has been a lot of hype on Kelly Chibale's work from University of Cape Town on the aminopyridine MMV390048. Unfortunately, this was from an announcement from an ...
12
votes
5answers
745 views

Introductory literature for synthetic / systems biology

I am a computer engineer (MSc in Computer Engineering) who's looking to switch into the field of synthetic / systems biology. I have a comprehensive layman's understanding of evolution, genetics, ...

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