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Results tagged with bioinformatics
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user 6455
The science of collecting and analyzing complex biological data such as genetic codes using informatics.
-2
votes
What E-value BLAST cut-off is best?
The e-value is required to have confidence in the hit, along with hit. Generally, an e-value of e-4 is preferred because, this cutoff is found to be sufficient enough by blast to confirm a hit as homo …
- 157
2
votes
Accepted
To what extent is it possible to understand if a bacteria can produce a protein? (in silico ...
Your problem will finally boil down to searching your sequence in the Blast databases. Performing Blast seems to be probably the best way to find out if your bacteria has that specific protein express …
- 157
1
vote
What is the close and related genome used for in Gene models?
Why a related genome helps:
1) Alignment of the reads first and assemble next.
2) The gene-space is already predefined ( the genes and their co-ordinates are already known), so if your assembly is f …
- 157
1
vote
About the quality of microsatellites
Try running software like Censor. If checks in the reference repeat databases and detects microsatellites. So, you can most probably be sure of the microsatellites generated. Moreover, the microsatell …
- 157
1
vote
Accepted
is there a way to do batch download for all gene pathways?
Try using KEGG REST.
http://rest.kegg.jp/link/pathway/hsa ## list of all genes and pathways in Humans
- 157