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Expected variant allele frequency of mutation present on 2 out of 3 copies of a 70% purity cancer sample

I'm sorry I did not read the article. But in the case that it is only the tumor which has the duplicated chromosomal region, I think you will have an increased contribution of the mutation relative to ...
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What is meant by 'identical alleles'?

These are just issues with singular and plural and whether you refer to individual copies or categories/types. Two of the same allele copies are the same allele (category/type). Two different alleles (...
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