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This website comes to my mind https://www.hiv.lanl.gov/content/index It is a HIV databases containing HIV sequence data and related immunologic information


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I haven't personally used it but seqtrace seems to be targeted for this purpose. It seems to be able to do alignments and facilitates multiple trace file analysis. I worry a little bit about not visually inspecting trace files for sequencing of clones, but I may be a relative dinosaur (about sanger at least). Here is the abstract: Modern applications of ...


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