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This question makes a number of incorrect assumptions and I don't have time to correct them. The short answer is that the virus has mutated probably hundreds of times since it entered humans in late 2019.
The lower figure on the NextStrain.org ncov page, "Diversity", shows the known mutations that have been identified so far. As I look at it now, there are ...
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Going through the possible answers
(A) Rates tend to be very high in most populations.
This is a very unclear statement. What does "high" mean? In humans, the average mutation rate per reproduction per nucleotide is of the order of $10^{-8}$ (Rahbari et al., 2016) (hence of the order of 10 - 100 mutations for the whole genome). Whether someone ...
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Since vaccination is not 100% protective against infection (i.e. the virus can sometimes succeed in establishing and replicating in a vaccinated host's body), the answer is yes. Furthermore, since vaccination is also not 100% protective against transmission — although it does lower the probability of transmission from infected individuals — such mutations ...
18
Change in genetic variance
From what I have been taught, Natural Selection (or even Artificial Selection) is great for panning favorable genes from a species and bringing them to the fore, however, it does not introduce new genetic changes.
Yes, you are pretty much right. In a given population, directional selection will ultimately reduce genetic ...
18
The surface structuresa that are responsible for the structural coloration of peacock feathers are actually barbules and rods made of the very same biopolymer that is responsible for pigmentation in many other animal species, namely melanin. Just as in other animals, melanin is produced in the melanocyte cells which reside in the skin's epidermis. The ...
14
The answer is chance or, even better, contingency.
About your calculations, it is true that the theoretical sequences are almost unlimited, but the basic scaffolds are not. Very different sequences can fold into the same basic scaffold and have a similar reactivity/function. So, even if not all the sequences have been explored on this planet, most of the ...
13
Short answer
All mutagens are potential carcinogens unless the mutagen is highly specific to a site. As noted in the question, carcinogens need not be mutagenic.
HPV causes oncogenic transformation of a cell because of certain proteins that it expresses. HPV is considered a carcinogen by the IARC. Some retroviruses are oncogenic: they might carry an ...
13
I accidentally wrote a lot!
I first discuss the term Darwinian evolution. I then describe the main evolutionary processes insisting on the two elements of interest in your question, that is mutations and natural selection. In the end, I directly address your two statements and bring a few more complications into the subjects.
Did you say Darwinian ...
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How can a non-mutagenic agent be carcinogenic?
An agent that causes overexpression of oncogenes or inhibition of tumor suppressors, would be carcinogenic but not mutagenic.
HPV, for instance, produces proteins that cause inactivation and degradation of tumor suppressors, p53 and pRb[1].
Regarding alcohol. As you guessed, alcohol is metabolized to form ...
13
Very simply, mutations do occur, as they do for any cultured organism. This is a well recognized problem in many fields of biology where organisms are cultured and remains in particular a problem for cultured mammalian cell research.
As far as I know there is no method for slowing or altering the rate of mutation as this is an inherent part of the RNA-...
12
You're right that the mutation must be in a germ cell in order to be passed on. Most errors are introduced during DNA replication (at a rate of around 10-10), which occurs a number of times between the zygote stage and mature gametes. This book estimates that there are 24 divisions between zygote and egg and 23n+34 divisions between zygote and sperm, where n ...
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Short answer
Large animals do get cancer. They may contract cancer with an incidence less than that estimated by absolute cell numbers, but there seems to be a lack of data on cancer rates in large animals to support this hypothesis conclusively.
Background
Whales contract cancer (Martineau et al, 2002). There does, however, seem to be a lack of correlation ...
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Alcohol itself is non-mutagenic because it does not directly alter DNA. (Additionally ethanol enhances carcinogenesis and is itself not a carcinogen - updated) There are similar non-mutagenic carcinogens such as estrogen - which is a carcinogen. Another important thing to realize is that a non-mutagenic carcinogen may not alter DNA, but instead alter ...
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The answer depends on what you mean by "observed".
Bacteria acquire antibiotic resistance genes all the time, for example. This happens 'in the wild', but you can see in the lab that bacteria can become resistant overnight - I'd call that 'observed'.
There are many papers about the emergence of antibiotic resistance (not that I'm suggesting this is the ...
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I think we may be missing a piece from Darwin's original hypothesis.
An outline of the first 4 chapters of Origin of Species form the kernel of the Theory of Evolution:
1: Variation under Domestication
2: Variation under Nature
3: Struggle for Existence
4: Natural Selection
Really you can't reduce evolution to less than variations; competition (struggle)...
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Lets state what a Mutation is first.
Mutation: A mutation is any change in an organism's genetic sequence which varies from that of the wild-type reference sequence (hg19/GrCH37 from 2009 or hg38/GrCH38 from 2013, which are the most current genome assembly).
Single Nucleotide Polymorphisms (SNPs): These are any single nucleotide base mutations which have ...
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This sort of method is indeed quite useful and frequently used in synthetic biology: I've used a similar approach before to generate 5' insulators for promoters.
Calculating the exact theoretical likelihood of what you want, so far as I understand, is a complex combinatoric equation that I wasn't able to get a nice closed form on with a few minutes of work. ...
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Cancer cells and normal cells differ on the genetic basis but they share the same genetic background, so they have not different DNA in the sense of two different people. They have to be different, since cancer cells have to accumulate mutations on a number of genes to become a cancer cell, which can survive and will not be directed into apoptosis. These are ...
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A single substitution can often be silent, or at least not impact the structure and function of the resulting protein in a significant way. But what you describe is a frameshift, and that is one of the most destructive mutations. It will completely change the sequence of the protein after this mutation and disrupt the function of those parts of the protein.
...
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Welcome to Biology.SE!
can environmental factors play a role in the amount of mutations that occur?
Yes! The environmental factors that increase the mutation rate are called mutagens. You will definitely want to have a look in the wikipedia article. You may also want to read the wikipedia page on mutagenesis
Some chemicals increase the mutation rate, ...
9
You may be interested in this 2005 Nature paper from the Chimpanzee Sequencing and Analysis Consortium: Initial sequence of the chimpanzee genome and comparison with the human genome. It breaks down the most common categories of genetic variation:
Single-nucleotide substitutions occur at a mean rate of 1.23% between copies of the human and chimpanzee ...
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Short answer
The claim is unclear but is essentially misleading and wrong. However, IMO, for lay people, it is a good approximation to just think that mutations are random!
Here, on Understanding evolution is a great source of information on what it means to say that mutations are random
Long answer
What is a mutation?
Mutation is an event causing an ...
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I don't know, whether the organism you are working with is diploid, but suspect it's an animal (or even a mammal), so the most parsimonious explanation would be that you have homozygotes and heterozygotes at this SNP-position.
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Good question.
There are many organisms that are technically biologically immortal. However, I would like to point out that the definition of biological immortality is this:
...cells that are not limited by the Hayflick limit, where cells no
longer divide because of DNA damage or shortened telomeres.
(That's from here.)
So biological immortality ...
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A recessive gene for four leaves has been identified (Tashiro et al., 2010). The clover is a tetraploid species and together with the fact that environmental conditions may also suppress the development of the fourth leaf, it indeed takes a lot of luck to find one. If it will bring you any is another question though.
In fact they are aiming at making a four-...
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While I get your intuition, the hypothesis seems implausible
Emerge of new CoV variants should be considered proportional to the
current spread of the virus. Each virus has a certain mutation rate that surely does not depend on lock-downs.
It seems implausible to interpret
lock-downs as physical limitations to viral spread, that could potentially be
...
7
Standing genetic variation is when there is more than one allele at locus in the population at the time-point in question. When an allele goes to fixation there is no standing genetic variation at the locus until new mutations occur. Loci where alleles are not fixed are described as having standing genetic variation.
"Standing genetic variation: the ...
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There's a 2003 paper published in the Journal of Korean Medical Science describing a case of a 'homunculus' within a teratoma: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3055135/
It contained some hair, brain tissues, cranial and other bones, but no internal organs.
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Pink individuals of the katydid species Amblycorypha oblongifolia are a relatively uncommon but natural phenomenon with a long history of research.
It looks from popular press accounts (Science Friday, Scientific American) that the pink coloration may be caused by a dominant allele, and is only rare because of a high selection pressure against pink ...
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It is called conditional mutation.
You flox (put lox sites around) gene of interest and express Cre recombinase driven by tissue-of-interest-specific promoter.
Illustration from here:
Using chemically-activatable variant of Cre recombinase (cre-ER) you can create knock-out in some cells of tissue of interest, not every.
Addition: a bit weird but still ...
answered Apr 30 '15 at 1:53
aaaaa says reinstate Monica
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