I understand that both are similar in structure
But how can they be easily identified as one or the other?
Is it simply based on the presence or lack of a named root (the root is identified as a particular ancestor) or outgroup?
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How can rooted and unrooted (phylogenetic) trees be distinguished from one another
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In case of a drawn figure, either look for the a short stem to the left, or for an explicitly labelled outgroup. Trees derived from phylogenetic analyses are normally unrooted by default, you need to root them by either making an arbitrary (but hopefully informed) decision or by adding an outgroup.
answered Dec 15 '11 at 8:40
Michael Kuhn
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Trees can not be distinguished from each other because every unrooted tree can be made rooted by adding a root and vice versa by deletion.
If you mean dendrograms... the root is always the one node where the distance to each leaf is the same. But I don't know of an unrooted dendrogram.
answered Dec 15 '11 at 8:29
peri4n
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How can rooted and unrooted (phylogenetic) trees be distinguished from one another
up vote
14
down vote
I understand that both are similar in structure
But how can they be easily identified as one or the other?
Is it simply based on the presence or lack of a named root (the root is identified as a particular ancestor) or outgroup?
asked Dec 15 '11 at 7:19
arcyqwerty
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In case of a drawn figure, either look for the a short stem to the left, or for an explicitly labelled outgroup. Trees derived from phylogenetic analyses are normally unrooted by default, you need to root them by either making an arbitrary (but hopefully informed) decision or by adding an outgroup.
answered Dec 15 '11 at 8:40
Michael Kuhn
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So when you say root it by making an arbitrary decision, does that mean labeling a particular ancestral individual as a root? Also, does this consider midpoint rooting? - arcyqwerty Dec 15 '11 at 8:43
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